MidgeBase gene description page [Pn.14476]
Outline
| Gene ID | Pn.14476 |
| Type | Protein coding gene |
| Scaffold | PnScaf24511 |
| Start | 9989 |
| End | 12316 |
| Direction | - |
Sequence
Transcript: 2262 (bp)
ATGTATCAACTACAAACGCGTATTAGTGATATTTTAAACTATCCACTTGCCGAGCGTATAAGTCAGCTGAGGTTTTGCATAGAAACCGCGCCAATTAAGGATTTACAAAGTTTTTACCCTCTTTTGGTTAGCAACATTTTCGGTGTGCATACTCAAAATCAAATTGGCTGGGGATTAAGAACAACGACTCAAAACAGCCCCGAGTACTACCTTCTGTATAACTTTTTCAATCCACACGAGGCATTTTTCCGCCTAATCTATCGACTTCAATCATGTGGTTTCGTCAACAAATACGAACTGGAATTTCCGCTTTTACCAAAAGGCTTCAAAACAATGCTGGAGAGCGCAAGAGTCGACGGATTCTACACGAAACTCATTAGCATAGACCACTTTCAGCCAAAGATGCTGTCACTGAACGCCTTCGACTTCTTCATTCTGCATTTCGCCATCCATGCAACCAAAAATCTCCATAAAATCTCACCGAGTGCAATGGCAGTGAACAATGAAAATACAATGACCGTCTACTTCAATCTCGTTGCCGACTATCTCTGCAATTTTCTTCCGAACGACCCAAACTCAGTCGTCTACCCTCAAATCGACATCTCACCGGTGAAAACGCCGACAGCACCAGTTTCAATTCCTATGACGCCTGTAAAGCAGCCAAAGTATTTATTACTCTCATCGCTGTCGCACCAAATTCAAAGTCCTACAACCCATCCGAGAGACATTCGACTGCAGGAGGGCACTGGACGCAACTCGACCAACTGGCGCAGTGAAACAATCATGATGTTCTTCATCGACTGCTGGCTAAGACACGATTTGGATGAAAGCTACGAGCTTCCGTCAAACGAGTTCATTCGTATTTTGAGGATTCTCGTCAAACAGCTGCACTATTTCGGCAACTCGGCCGAAAAAGACACAAGCTCGCTCGCCTTACTCCGTCAACAATCGCAGAATCTGCTGAATGCTCGAATGTATGGCTTTCTAAAGGCGGTAATGGCTCGCTGGCCTCTCGACACCTCTTTTCTCAACGTTCTCGAGCTCTGGCTATCGTACATTCAACCGTTCCGCTACATCTTCAACAGAAACATTCAAAATCTCAATAGCGAGACTGTCGATATTCCGGACCGATTTAAGCCGTTCATCAACGAAAACTTGCTGTGCTACACACAAATATTTGTGCGTCTGATTCCTCGCTTCATGAAAATGGACCTGAGCTTGAGCAAAAACGCCTTCATGTTGTTCCGCATGCTCAAAGTCTTTCGACAACTCAGCGGCGTCTTGCGAGAAATGGAGCGTGTGATGATGAGCAATAACACAGGAATGCGCTCACACCATTCCTCAGTTCACGACACTTCAATGCACTCTCATCGCTCACCAAATAGCTCAATGAATCGCTCGAACGAGAGATATTCGATGCATCGCTATGCAAGTCAGTCCGCTCTTTTTGACGACAGCACCTACCTCTGCATGTTTAGCGACGAAGTTACTCGACAGGTGTACGAGCTCATGCAGCGAGTGTATGCAGCAAAGCTAAAAACAAAGCACGAAGTCACTACAATGGAGGAGCACATGAAGCATAACATAACGTTCTGGGAGAGATTTCTCCAATTCATTGGCTGGCTGAGCTCATTGAGTTTCTCATTCACGCAAGCACTCGAGGAGAAGAAGAAGACTCCATACTACTTGGACTTCATTCTGGACGTGCTTTCGCCAATGTTTAATATTCCCATCGAAGACGCAACTGCAAACTTCTCAGCAGACGAAAATCTCTATGATGAGAGCGACAAAGAAAACACGACTCAGAACTCTTCGCTCAACATCACGCCGAGCTTCATGAAAAGTCAAACGAGTCGAATCAATTACACGGGCGATCCCGAATTGCTTCCAATTATGAGCAGCGAAGTCAAGTTTCTCGTTCGATTTCTTTATCAAATTTCCTCTCGACTGAATCAGATGTTTGAGGATGAGTTCAACGCTATTTGGAACAAGGATGGCTTCAGCGGACGCTTTGCACGACAAATTTTGATGCCACCGGTTGAGACGAGAATATTTGATAAGTCGGCTGGCTATGCGGAGCTGCAAGTTAAGCAAATTGGACCACGCTTGAGTTTGCGAAAACTCGCACGCAAGACCTTCGTTATGCTTTTGATTGCTTCTTTTATCACCGGACGAGTCTTTTTCGGAGCATCGAGCATCGGATTTATGACATTTATTCTAATCACCTTCATTTATTTGTTTGTCAATGCACTTGTTACACCC
Protein: 754 (aa)
MYQLQTRISDILNYPLAERISQLRFCIETAPIKDLQSFYPLLVSNIFGVHTQNQIGWGLRTTTQNSPEYYLLYNFFNPHEAFFRLIYRLQSCGFVNKYELEFPLLPKGFKTMLESARVDGFYTKLISIDHFQPKMLSLNAFDFFILHFAIHATKNLHKISPSAMAVNNENTMTVYFNLVADYLCNFLPNDPNSVVYPQIDISPVKTPTAPVSIPMTPVKQPKYLLLSSLSHQIQSPTTHPRDIRLQEGTGRNSTNWRSETIMMFFIDCWLRHDLDESYELPSNEFIRILRILVKQLHYFGNSAEKDTSSLALLRQQSQNLLNARMYGFLKAVMARWPLDTSFLNVLELWLSYIQPFRYIFNRNIQNLNSETVDIPDRFKPFINENLLCYTQIFVRLIPRFMKMDLSLSKNAFMLFRMLKVFRQLSGVLREMERVMMSNNTGMRSHHSSVHDTSMHSHRSPNSSMNRSNERYSMHRYASQSALFDDSTYLCMFSDEVTRQVYELMQRVYAAKLKTKHEVTTMEEHMKHNITFWERFLQFIGWLSSLSFSFTQALEEKKKTPYYLDFILDVLSPMFNIPIEDATANFSADENLYDESDKENTTQNSSLNITPSFMKSQTSRINYTGDPELLPIMSSEVKFLVRFLYQISSRLNQMFEDEFNAIWNKDGFSGRFARQILMPPVETRIFDKSAGYAELQVKQIGPRLSLRKLARKTFVMLLIASFITGRVFFGASSIGFMTFILITFIYLFVNALVTP
| Type | Start | End | Length |
| CDS |
9992 |
11838 |
1847 |
| CDS |
11902 |
12316 |
415 |
| intron |
11839 |
11901 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001847782 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS26945.1| conserved hypothetical protein [Culex quinquefasciatus] |
1e-159 |
| InterPro |
IPR024129 |
Sphingomyelin phosphodiesterase 4 |
|
| Gene Ontology(MF) |
GO:0050290 |
sphingomyelin phosphodiesterase D activity |
|
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000339721 |
| H. sapiens |
ENSP00000397078 |
| D. plexippus |
DPOGS203044PA |
| P. humanus |
PHUM556420-PA |
| H. melpomene |
HMEL016154-PA |
| H. sapiens |
ENSP00000259217 |
| H. sapiens |
ENSP00000405363 |
| H. sapiens |
ENSP00000403915 |
| C. quinquefasciatus |
CPIJ005541 |
| A. aegypti |
AAEL002910 |
| A. mellifera |
GB10643-PA |
| H. sapiens |
ENSP00000406325 |
| P. vanderplanki |
Pv.03241 |
| H. sapiens |
ENSP00000391896 |
| H. sapiens |
ENSP00000387762 |
| A. gambiae |
AGAP000405 |
| B. mori |
BGIBMGA014044-TA |
| H. sapiens |
ENSP00000405187 |
| D. melanogaster |
FBgn0037958 |
| T. castaneum |
TC012509 |
| H. sapiens |
ENSP00000401648 |
| H. sapiens |
ENSP00000397479 |
| H. sapiens |
ENSP00000394313 |
| H. sapiens |
ENSP00000386531 |
| N. vitripennis |
NV11257-PA |