MidgeBase gene description page [Pn.14434]
Outline
| Gene ID | Pn.14434 |
| Type | Protein coding gene |
| Scaffold | PnScaf24277 |
| Start | 65290 |
| End | 66846 |
| Direction | - |
Sequence
Transcript: 1488 (bp)
ATGCAGCTCGAATTAACTGAACAAGTGCTGAATTATATCGAGCAGAACGAGAGTGCGGATTCACTCGACTTAGCTAGTGAATTTCAGCAAGATCATCAAAAAGTCATCGGTGCTTTGAAAAGTATCGAAGCTCATGGCGAAATTTTAAAGTCTGAGACGACTTCTAAGAAAGTATGGGAGTTGACAGACGAAGGCAATTATGTGATTGAACATGGATCGCATGAAGCTGCAGTCTATAATGCCATTCCGAGTGATGGAATTTCGCAAGCCGATTTAATGAAGACATCACCGAATGCGAAAGTCGGTTTCAGCAAAGCTATGTCACAGGGATGGATTCAAATTGATAAGAGCGGAAAGGCACCGATTGTGAAGAAAAAAGTCGACTCGATTGATGATGTGGTACAACAACATTTAATCGATATTGCTGCAGGAAAAAGCGCAAACATTCCAGACAACGTAAAAGCTGATTATAAGAAAAGAAAATTGCTTGTCGAAAACACCATCAAGAGTTTCATCATAACGAAAGGACCCGAATTCACGACAACTCTTACTAAGCTTGAAACTGATTTGACTTCAGATATGCTTGCTTCGGGTGCTTGGAAAAATCTCAAGTTCAAGGAGTACAATTTCGACGCGCGCGGTGCAGTTCCGGCGGCAGGCTACTTACATCCGCTTCTTAAAGTTCGATCCGAAGTAGCGGAAATTTTTACTCAAATGGGATTCGTCGAAATGCCAACGAACAATTATGTCGATGCATCTTTCTGGAATTTCGATGCACTCTATCAACCACAAATGCACCCAGCGAGAGACGCGCAAGATACTTTCTTCTTGTCTGACCCTGAAAGATGTTTTAAATTTCCCATGGCCTATCTCGAAAGAGTTAAGGACGCTCACGAAATAGGAGGAAATAGCTCAATTGGATATAGATACAAGTGGAAAATTGAAGATGCTCAAAAGAATATTTTGAGAACGCACACGACAGGTGTTTCGGCTAGAATGCTCTACAAACTCGCAAATCAAGAAGGAGGCTTCAAGCCCGTTAAATATTACTCTATCGATAAAGTTTTCCGTAATGAAACGCTTGATGCTACTCATCTTGCAGAATTCCATCAGGTAGAGGGAGTTGTTGCGGGTGTCGACATCAGTTTAGGCGGTCTGAAGGGAATCATTGGAGAATTCTTCCATAAAATGGGCCTTACCGATATTCAATTCAAACCAGCTTATAATCCTTACACTGAACCGTCGATGGAAATTTTTGCTTATCACAAAGGTCTAGGAAAGTTGATTGAAATCGGCAATAGTGGCATGTTCAGAAGAGAAATGTTGGATGCAATGCATATTCCAAGCAACGTCAACGTATATGGCTATGGCCTCTCTTTAGAAAGACCTACAATGATTAAATATGGAATTGCAAATATAAGAGAACTAATTGGACCGAGAGTTGATTTGAAGAAGGTACAGGAATCTGGACTTTGTCGCTTAGATAAG
Protein: 496 (aa)
MQLELTEQVLNYIEQNESADSLDLASEFQQDHQKVIGALKSIEAHGEILKSETTSKKVWELTDEGNYVIEHGSHEAAVYNAIPSDGISQADLMKTSPNAKVGFSKAMSQGWIQIDKSGKAPIVKKKVDSIDDVVQQHLIDIAAGKSANIPDNVKADYKKRKLLVENTIKSFIITKGPEFTTTLTKLETDLTSDMLASGAWKNLKFKEYNFDARGAVPAAGYLHPLLKVRSEVAEIFTQMGFVEMPTNNYVDASFWNFDALYQPQMHPARDAQDTFFLSDPERCFKFPMAYLERVKDAHEIGGNSSIGYRYKWKIEDAQKNILRTHTTGVSARMLYKLANQEGGFKPVKYYSIDKVFRNETLDATHLAEFHQVEGVVAGVDISLGGLKGIIGEFFHKMGLTDIQFKPAYNPYTEPSMEIFAYHKGLGKLIEIGNSGMFRREMLDAMHIPSNVNVYGYGLSLERPTMIKYGIANIRELIGPRVDLKKVQESGLCRLDK
| Type | Start | End | Length |
| CDS |
65293 |
66498 |
1206 |
| CDS |
66565 |
66846 |
282 |
| intron |
66499 |
66564 |
66 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656084 |
phenylalanyl-tRNA synthetase alpha chain [Aedes aegypti] gb|EAT45883.1| phenylalanyl-tRNA synthetase alpha chain [Aedes aegypti] |
0.0 |
| InterPro |
IPR011991 |
Winged helix-turn-helix transcription repressor DNA-binding |
|
| InterPro |
IPR004529 |
Phenylalanyl-tRNA synthetase, class IIc, alpha subunit |
|
| InterPro |
IPR002319 |
Phenylalanyl-tRNA synthetase |
|
| InterPro |
IPR006195 |
Aminoacyl-tRNA synthetase, class II |
|
| Gene Ontology(BP) |
GO:0006432 |
phenylalanyl-tRNA aminoacylation |
|
| Gene Ontology(BP) |
GO:0006418 |
tRNA aminoacylation for protein translation |
|
| Gene Ontology(BP) |
GO:0043039 |
tRNA aminoacylation |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0004826 |
phenylalanine-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0004812 |
aminoacyl-tRNA ligase activity |
|
| Gene Ontology(MF) |
GO:0000049 |
tRNA binding |
|
| Pfam |
PF01409.15 |
tRNA synthetases class II core domain (F) |
8.9e-81 |
| Pfam |
PF09012.5 |
FeoC like transcriptional regulator |
0.016 |
| Pfam |
PF00152.15 |
tRNA synthetases class II (D, K and N) |
6.7e-06 |
| Pfam |
PF00587.20 |
tRNA synthetase class II core domain (G, H, P, S and T) |
0.00013 |
| Pfam |
PF09756.4 |
DDRGK domain |
0.045 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP002653 |
| C. quinquefasciatus |
CPIJ004018 |
| N. vitripennis |
NV10405-PA |
| P. humanus |
PHUM399940-PA |
| H. sapiens |
ENSP00000320309 |
| P. vanderplanki |
Pv.13768 |
| D. plexippus |
DPOGS202350PA |
| A. aegypti |
AAEL002867 |
| H. sapiens |
ENSP00000396548 |
| T. castaneum |
TC011106 |
| H. sapiens |
ENSP00000468051 |
| A. mellifera |
GB13191-PA |
| D. melanogaster |
FBgn0030007 |
| A. aegypti |
AAEL017409 |
| S. invicta |
SI2.2.0_05204 |
| H. melpomene |
HMEL009533-PA |
| B. mori |
BGIBMGA014337-TA |
| H. sapiens |
ENSP00000467384 |