MidgeBase gene description page [Pn.14398]
Outline
| Gene ID | Pn.14398 |
| Type | Protein coding gene |
| Scaffold | PnScaf24138 |
| Start | 1669 |
| End | 2859 |
| Direction | - |
Sequence
Transcript: 1119 (bp)
ATGTTCGTGACAAAGCACAACCGACGCTTCGACGCCGGCGAGGTTTGGTTCACGGTGGCGATCAACGAGCTGTCGGACCTCACGCGGGACGAGATAAGAGCGACGCGAAAGGGCTACAAGCCGCCGCCCGAGCAGTGCCGCTCCTCCTCCACGTCCTCGTCCTCGTCTTCCAGCGAGGACCAGCAGCACTGGCGACGCAAGCGCCACGCTCAGCCGCTGCCCGCCTCCTTCGACTGGCGGGACTTTGGCGCGGTCTCCGAAGTCCGCGACCAAAGCCCATGCGCGAGCTGCTACGCGTTTGTAGCGTCGTCGGCGCTCGAGTCGCACGGCTTCCTCCGCACCGGCGAAATGTGGTCGCTCGCGCCCCAGAACCTCGTCGACTGCGCGCAGTCGGACGGCTGCAAGGGCGGCAGCGCCGTCGCGAGCTTCGACTACGTCGCGGCCAACCGTGGCATCAACACCGAGGCCGACTACCCCTACACGGCAGCTGCCGGCAAGTGCAGGTACAACGCCGCCAGGCCGGCCATGACGTGCGCCGGGACGGGCCGTGTCGAGCCCTCCGAAGACGCGCTGCAGACGGCGCTCGTGACAATCGGGCCGATCGCCGTCGCCGTCGACAGCGACCACGCGAGCTTCCATCACTACAGGTCGGGCGTTTTCTACGAGCCGAGGTGCCGCAGCGACTTCGCCGACCACGCCATGCTCGCCGTCGGCTACGGCACCGAGCGCAACACCAGCACCGGCGACAGTATCGACTTCTGGATCGTCAAGAACAGCTGGGGCGCGGACTGGGGTGAGAACGGCTACATCCGCATCCGCCGCAACGCCGACAACCACTGTGGGGTCGCTCGCGAGGGCGCGTACCCTAAGATGGATGGACCCTTCGATGGCGGCCACAACGGTGGTAGCGAGGTTCACGGCAGTCCACGATTCGAAGAAGAAGCTGAGGATCCTGCTTATGGGGAAGAGGAGGAGAAGGAGGAAGAATACCCTGGGGATTTAGATGGGGAGGAGGGGGAAGATGAAGAAGAGGAGGAGGAGGAATACCCTGGGGACGATGACACAATTCCCGATGAGGAAGACGAAGCTAATGCTGGCGAGGAGTATTACGAGGATTAT
Protein: 373 (aa)
MFVTKHNRRFDAGEVWFTVAINELSDLTRDEIRATRKGYKPPPEQCRSSSTSSSSSSSEDQQHWRRKRHAQPLPASFDWRDFGAVSEVRDQSPCASCYAFVASSALESHGFLRTGEMWSLAPQNLVDCAQSDGCKGGSAVASFDYVAANRGINTEADYPYTAAAGKCRYNAARPAMTCAGTGRVEPSEDALQTALVTIGPIAVAVDSDHASFHHYRSGVFYEPRCRSDFADHAMLAVGYGTERNTSTGDSIDFWIVKNSWGADWGENGYIRIRRNADNHCGVAREGAYPKMDGPFDGGHNGGSEVHGSPRFEEEAEDPAYGEEEEKEEEYPGDLDGEEGEDEEEEEEEYPGDDDTIPDEEDEANAGEEYYEDY
| Type | Start | End | Length |
| CDS |
1672 |
2527 |
856 |
| CDS |
2597 |
2859 |
263 |
| intron |
2528 |
2596 |
69 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
CAA56915 |
cathepsin l [Nephrops norvegicus] prf||2119193B cathepsin L-related Cys protease |
2e-64 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR025661 |
Cysteine peptidase, asparagine active site |
|
| InterPro |
IPR025660 |
Cysteine peptidase, histidine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.0014 |
| Pfam |
PF08246.7 |
Cathepsin propeptide inhibitor domain (I29) |
0.022 |
| Pfam |
PF10500.4 |
Nuclear RNA-splicing-associated protein |
0.072 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
1.8e-68 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes