MidgeBase gene description page [Pn.14388]
Outline
| Gene ID | Pn.14388 |
| Type | Protein coding gene |
| Scaffold | PnScaf24060 |
| Start | 589 |
| End | 1354 |
| Direction | + |
Sequence
Transcript: 531 (bp)
ATGAAGGTGCCATTGAAGCTGGGCTGGGGCCACGATCTCGTGCGAGTGTGCAACGTTTGTCGCGATGACCTCATGAAAAACGAAAACGAGCGCTTTGACGAGGAGACGAAGAACGTGAAGGTCCGGAAGTATGGCGAGGTGCTGTTCAACGCGGTGAGCAGCGTGGCGGCCGCTCTAGAATACCCAAAGGAACTGATAAAAGACAGCGTTCGGCCCGAGTATTGGGCCCGCGACAGCGAGTCTCCGTCGTGTTCGCTGTGCGACCAGGTCTTTGGCAACATCGACGACATGGAGCAATCGAAAATTCGTGAGCTGAGCAGCGCTTCGGGGAACTCGTTGGGAAACTCGCCCATTCACGTCATCGACATTCGGCGACATCACTGTCGGGCGTGCGGCGCAGCTGTCTGTAATAAATGCTCATTAAATCGACGGCCCGTCCCCGAGCGCGGATGGAACAACGAGGTCCGAGTCTGTGATAATTGCTGGAAGAAAAATTCAAAGGACTCACCGACGTCGTCATCATCACTGTCA
Protein: 177 (aa)
MKVPLKLGWGHDLVRVCNVCRDDLMKNENERFDEETKNVKVRKYGEVLFNAVSSVAAALEYPKELIKDSVRPEYWARDSESPSCSLCDQVFGNIDDMEQSKIRELSSASGNSLGNSPIHVIDIRRHHCRACGAAVCNKCSLNRRPVPERGWNNEVRVCDNCWKKNSKDSPTSSSSLS
| Type | Start | End | Length |
| CDS |
589 |
676 |
88 |
| CDS |
845 |
1137 |
293 |
| CDS |
1202 |
1351 |
150 |
| intron |
677 |
844 |
168 |
| intron |
1138 |
1201 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843564 |
conserved hypothetical protein [Culex quinquefasciatus] gb|EDS33207.1| conserved hypothetical protein [Culex quinquefasciatus] |
5e-33 |
| InterPro |
IPR000306 |
Zinc finger, FYVE-type |
|
| InterPro |
IPR017455 |
Zinc finger, FYVE-related |
|
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR011011 |
Zinc finger, FYVE/PHD-type |
|
| Gene Ontology(MF) |
GO:0046872 |
metal ion binding |
|
| Pfam |
PF00643.19 |
B-box zinc finger |
6.6 |
| Pfam |
PF01363.16 |
FYVE zinc finger |
9.8e-20 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000377757 |
| N. vitripennis |
NV15445-PA |
| P. vanderplanki |
Pv.00503 |
| H. sapiens |
ENSP00000452232 |
| T. castaneum |
TC007656 |
| M. musculus |
ENSMUSG00000042628 |
| A. aegypti |
AAEL006020 |
| A. mellifera |
GB12334-PA |
| H. sapiens |
ENSP00000326921 |
| P. humanus |
PHUM229580-PA |
| S. invicta |
SI2.2.0_16462 |
| H. sapiens |
ENSP00000450742 |
| H. sapiens |
ENSP00000452442 |
| C. quinquefasciatus |
CPIJ002025 |
| A. gambiae |
AGAP002036 |