MidgeBase gene description page [Pn.14309]
Outline
| Gene ID | Pn.14309 |
| Type | Protein coding gene |
| Scaffold | PnScaf23619 |
| Start | 15504 |
| End | 16844 |
| Direction | - |
Sequence
Transcript: 1281 (bp)
ATGGCAGGAACACTCGAGGATAAATCAATCTGGGAAGATGAAGAATTGCTCGGAGAGGAGGTTTTAAGGATGCCAACAGAGGATATTCAGAATCGCACTCGCTTGATGGACAATGAAATCAAAATCATGAAGTCCGAAGTTATGAGAATCAATCACGAGCTGCAGGCGCAGAACGAAAAGATTAAGGACAACACTGAGAAGATCAAAGTGAACAAGACACTTCCCTACTTGGTATCGAACGTGATTGAGCTCCTCGACATAGATCCGCAGGAAGAGGAAGATGACGGTGCAGTAAATTTGCTCGATTCTCAACGAAAAGGAAAGTGTGCTGTAATCAAAACATCCACTCGTCAAACATACTTTTTGCCCGTGATCGGCTTGGTTGATCCCGAGAAGTTGAAGCCAGGCGATCTCGTCGGTGTCAACAAAGATTCCTACTTGATTTTGGAAACTCTGCCAGCCGAGTACGACGCTCGAGTGAAGGCTATGGAAGTTGACGAGCGCCCGACTGAGCAGTACTCCGATATCGGAGGCTTAGACAAACAAATTCAAGAGCTTATTGAGGCCGTTGTACTGCCCATGACTCACAAAGACAAGTTCAAAAATCTCGGCATCCATCCGCCAAAGGGAGTTTTGCTGTATGGACCACCAGGAACTGGAAAAACATTGCTCGCGAGAGCTTGCGCTGCTCAGACGAAATCAACTTTCTTGAAACTCGCCGGTCCGCAGCTCGTTCAAATGTTCATCGGTGACGGCGCAAAATTGGTCCGCGATGCGTTTGCATTGGCAAAGGAGAAAGCGCCAGCAATCATCTTCATTGACGAATTGGACGCCATCGGAACAAAACGTTTCGACTCAGAGAAGGCTGGTGATCGCGAGGTTCAGCGCACTATGTTAGAGTTGCTTAATCAATTGGACGGCTTTAGCTCGCAAGCCGACATCAAAGTCATTGCTGCTACGAATCGTGTCGACATCCTGGATCCTGCTCTTCTCCGCTCCGGTCGTCTCGATCGTAAAATCGAGTTTCCACATCCCAATGAGGAGGCGCGTGCACGTATTATGCAAATTCATTCACGAAAGATGAACGTAAGCCCCGACGTAAATTTCGAAGAATTGGCACGAACGACAGACGACTTTAACGGCGCACAGTGTAAGGCGGTTTGTGTTGAGGCCGGTATGATTGCCCTCCGTCGTTCCGCGAGCACCGTGACACACGAAGACTTCATGGATGCCATCATGGAGGTGCAAGCAAAGAAGAAGGCAAACTTGAACTACTATGCT
Protein: 427 (aa)
MAGTLEDKSIWEDEELLGEEVLRMPTEDIQNRTRLMDNEIKIMKSEVMRINHELQAQNEKIKDNTEKIKVNKTLPYLVSNVIELLDIDPQEEEDDGAVNLLDSQRKGKCAVIKTSTRQTYFLPVIGLVDPEKLKPGDLVGVNKDSYLILETLPAEYDARVKAMEVDERPTEQYSDIGGLDKQIQELIEAVVLPMTHKDKFKNLGIHPPKGVLLYGPPGTGKTLLARACAAQTKSTFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPAIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSQADIKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARIMQIHSRKMNVSPDVNFEELARTTDDFNGAQCKAVCVEAGMIALRRSASTVTHEDFMDAIMEVQAKKKANLNYYA
| Type | Start | End | Length |
| CDS |
15507 |
16109 |
603 |
| CDS |
16167 |
16844 |
678 |
| intron |
16110 |
16166 |
57 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001655453 |
26S protease regulatory subunit 6a [Aedes aegypti] gb|EAT46279.1| 26S protease regulatory subunit 6a [Aedes aegypti] |
0.0 |
| InterPro |
IPR003593 |
AAA+ ATPase domain |
|
| InterPro |
IPR003959 |
ATPase, AAA-type, core |
|
| InterPro |
IPR003960 |
ATPase, AAA-type, conserved site |
|
| InterPro |
IPR005937 |
26S proteasome subunit P45 |
|
| Gene Ontology(BP) |
GO:0030163 |
protein catabolic process |
|
| Gene Ontology(CC) |
GO:0005737 |
cytoplasm |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Gene Ontology(MF) |
GO:0017111 |
nucleoside-triphosphatase activity |
|
| Pfam |
PF02562.11 |
PhoH-like protein |
0.0032 |
| Pfam |
PF13207.1 |
AAA domain |
0.0045 |
| Pfam |
PF05729.7 |
NACHT domain |
0.055 |
| Pfam |
PF07728.9 |
AAA domain (dynein-related subfamily) |
4e-06 |
| Pfam |
PF13481.1 |
AAA domain |
0.0029 |
| Pfam |
PF06414.7 |
Zeta toxin |
0.046 |
| Pfam |
PF07724.9 |
AAA domain (Cdc48 subfamily) |
0.00015 |
| Pfam |
PF01695.12 |
IstB-like ATP binding protein |
0.0032 |
| Pfam |
PF06068.8 |
TIP49 C-terminus |
0.039 |
| Pfam |
PF00910.17 |
RNA helicase |
0.082 |
| Pfam |
PF13245.1 |
Part of AAA domain |
0.0018 |
| Pfam |
PF06745.8 |
KaiC |
0.052 |
| Pfam |
PF05673.8 |
Protein of unknown function (DUF815) |
0.00092 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
2.9e-05 |
| Pfam |
PF13401.1 |
AAA domain |
7.9e-06 |
| Pfam |
PF12506.3 |
Protein of unknown function (DUF3713) |
0.011 |
| Pfam |
PF13479.1 |
AAA domain |
0.017 |
| Pfam |
PF13521.1 |
AAA domain |
0.11 |
| Pfam |
PF13671.1 |
AAA domain |
0.017 |
| Pfam |
PF00158.21 |
Sigma-54 interaction domain |
0.025 |
| Pfam |
PF01078.16 |
Magnesium chelatase, subunit ChlI |
0.0073 |
| Pfam |
PF00004.24 |
ATPase family associated with various cellular activities (AAA) |
6e-42 |
| Pfam |
PF13238.1 |
AAA domain |
0.075 |
| Pfam |
PF13173.1 |
AAA domain |
0.02 |
| Pfam |
PF06009.7 |
Laminin Domain II |
0.046 |
| Pfam |
PF05496.7 |
Holliday junction DNA helicase ruvB N-terminus |
3.3e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000431144 |
| P. humanus |
PHUM043100-PA |
| A. mellifera |
GB14678-PA |
| T. castaneum |
TC010100 |
| B. mori |
BGIBMGA004782-TA |
| H. sapiens |
ENSP00000437291 |
| A. aegypti |
AAEL002508 |
| M. musculus |
ENSMUSG00000002102 |
| A. gambiae |
AGAP011557 |
| H. sapiens |
ENSP00000298852 |
| N. vitripennis |
NV15940-PA |
| H. melpomene |
HMEL008162-PA |
| D. melanogaster |
FBgn0028684 |
| D. plexippus |
DPOGS204033PA |
| P. vanderplanki |
Pv.12051 |
| H. sapiens |
ENSP00000433596 |
| H. sapiens |
ENSP00000433097 |
| C. quinquefasciatus |
CPIJ016407 |
| S. invicta |
SI2.2.0_06515 |
| A. gambiae |
AGAP000616 |