MidgeBase gene description page [Pn.14251]
Outline
| Gene ID | Pn.14251 |
| Type | Protein coding gene |
| Scaffold | PnScaf23289 |
| Start | 812 |
| End | 3027 |
| Direction | + |
Sequence
Transcript: 1029 (bp)
ATGGCTGCGATGGAAATCGACAGAGTCGCTGCTACTTTCAAAGACCAAACCGTGTTCCTAACGGGAGCGACTGGTTTCATGGGAAAGGTCTTCCTCGAGCGACTTCTGCGAGTCACCGAGGTGCGCAAGATTTTCATTCTGATTCGAACGAAGCGCGACAAAAATGCTGACGATCGCCTTATCGACATTTTCCAAAATCCCCTCTTCGACAAGCTGAAGGCGAGTCGACCACTGGCGCAGATCCTCGAGCGAGTGCAGGTCGTGAGCGGCGACTGCGGCTTCAAGCGCCTCAACCTCTCGGCCGACGACCACGCCGCTATCACGCGCAGCGTCTCCATGATCTTCCACTTCGCCGCGACCGTGAAGTTCACCGAGAAGTTCAAGCGCGCCATCGAGCTCAACGTGCGCGGCACCCGCGAGATGATCCAGCTCGCGCTCGAGTGCGAACACCTCCAAGTGTTCTGCCACCTCTCGACCGCCTTCTGCCACCTCGACCAGAAGATGCTCTACGAGAGGCCGTACACGCCGCCGGCCGACCCGCACGAGATGATCGAGGTGGCCGAGAAGTTCGGCGAGGAGCGCGTGGAGCAGCTGCTCGGCGGCTTCCTCACTCGCGACGTGCCCAACAGCTACGTCTTCACGAAGGCCCTCTCCGAGGCGCTCGTGGCCGACGCGCACGTCAGACACAAGCTGCCCGTGCTCATGTGCCGACCCGTCATCATCATGTCCATGTACAAGGACCCGATCCCAGGCTGGACGGACAACATGAACAACGTGGCGGGCGTGTTTACGGCCGCCGGCCTGGGCGTGCTGCGGACGCTGGTCTTCAAGAAAGACACCGAGTGTAACACGTTTCCGGTGGACTACACGATCAACAACATCATGACGTCGACGTGGGACTACTTGAGCAATCACAAAGCATCGCTGCACATCGTCAACCTTGAGTACGAGCCAGTCGAGATGTATGACGAGTGGCAGATTATGCTGAAAATCTTGCGAGAACTTTATCCCTTCGACATCACACTTTGG
Protein: 343 (aa)
MAAMEIDRVAATFKDQTVFLTGATGFMGKVFLERLLRVTEVRKIFILIRTKRDKNADDRLIDIFQNPLFDKLKASRPLAQILERVQVVSGDCGFKRLNLSADDHAAITRSVSMIFHFAATVKFTEKFKRAIELNVRGTREMIQLALECEHLQVFCHLSTAFCHLDQKMLYERPYTPPADPHEMIEVAEKFGEERVEQLLGGFLTRDVPNSYVFTKALSEALVADAHVRHKLPVLMCRPVIIMSMYKDPIPGWTDNMNNVAGVFTAAGLGVLRTLVFKKDTECNTFPVDYTINNIMTSTWDYLSNHKASLHIVNLEYEPVEMYDEWQIMLKILRELYPFDITLW
| Type | Start | End | Length |
| CDS |
812 |
1012 |
201 |
| CDS |
1729 |
2278 |
550 |
| CDS |
2485 |
2647 |
163 |
| CDS |
2910 |
3024 |
115 |
| intron |
1013 |
1728 |
716 |
| intron |
2279 |
2484 |
206 |
| intron |
2648 |
2909 |
262 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ADI82776 |
fatty-acyl CoA reductase 3 [Ostrinia nubilalis] |
8e-77 |
| InterPro |
IPR016040 |
NAD(P)-binding domain |
|
| InterPro |
IPR013120 |
Male sterility, NAD-binding |
|
| Gene Ontology(MF) |
GO:0000166 |
nucleotide binding |
|
| Pfam |
PF01370.16 |
NAD dependent epimerase/dehydratase family |
6.4e-09 |
| Pfam |
PF01073.14 |
3-beta hydroxysteroid dehydrogenase/isomerase family |
3.8e-07 |
| Pfam |
PF02719.10 |
Polysaccharide biosynthesis protein |
5.5e-05 |
| Pfam |
PF07993.7 |
Male sterility protein |
3.8e-63 |
| Pfam |
PF08659.5 |
KR domain |
0.0028 |
| Pfam |
PF00106.20 |
short chain dehydrogenase |
0.0051 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.08062 |