MidgeBase gene description page [Pn.14246]
Outline
| Gene ID | Pn.14246 |
| Type | Protein coding gene |
| Scaffold | PnScaf23277 |
| Start | 306 |
| End | 6451 |
| Direction | - |
Sequence
Transcript: 2538 (bp)
ATGTTGTATTATCCACGTGTTGAGGTCGGTCCCGAGAATCCGCTACGTGTTGAACGTGACGGCACAGCGAAATTGGATTGCAATGTCGATGCGAAGCCGAAGGTGGCGAACGTACGGTGGACGCGAGGCGGACGTTTCATTAGCTCCTCGTTCTCACACACCATCCACCGCGTGTCGGTGCAGGACGCAGGCGAGTACGAGTGCACCGCCGACAACGGTCTCGGTCAAACTGGCTCTGGTAAGGTCACACTTGACGTTCTCTTTGCTCCGGTCGTCGTGATCGAGACGAAGACGCGCGAAGCCGAGGAACGCGAGAGCATCAGCATAAAATGTAATGTCACCTCGAATCCGCCGCCAGTGGAGGTCGAGTGGGTAAAAGAGGGCAGCCCCGAATTTCGTCAGTCAAGCGACGTTCTTGCGCTTAACGACATCCGAGCCGAACACGCAGGCACTTATGTTTGTCGCGGTATCAACAACATGCGTCCATTTGGAGTAAAAGCTACGGAGCGCGTCGGCAACTCGACCGTCGCCGTGCTCGTCCGTCACCGTCCCGGCAAGGCCGTCATTACGCCCAACAAGCCCGTCGTCCACGTCGGAAACAGCGTGACATTTACGTGCTCCGCAAATCCGCCCGGCTGGCCCGTTCCGCAATTCCGCTGGTTCCGCGATGCCGAAGGTGAAATTTCGACGCAGAAGGTGCTCTCGCAGGGACCGCAATACGTCATTCCACGTGCACACTTGGGCAGCGAAGGACGATACCACTGCCACGCTGCCAACGAGCTCGGTCACGGCGAAATGGCGACAATCACCCTTGAGGTCCACCAGCCGCCTCAGTTCCTCGCCAAGCTTCAGCAGCATTTGACGCGCCGCGTCGGCGACAGTGACTTCAGCGTGTCGTGCAGTGCAAAGGGAAAACCGAAGCCCGCAGTAAAGTGGTTCAAGGACGGTCGCGAGTTGACTGGTGAAGCAAATTTCTACGAGATCACGACCTCGCCGAACGAGGGACCTAACGGCATGGTAACCGTTCAGAGCAACCTCAAATTCTACGGTAAGGGACGGCCCAACCAGAACCAGCTGCTACCTAATGACCGCGGCACTTACTCGTGCGTCTACCAGAACGAAGTCAATTCCGCCAACTCCACGATGCACCTCAAAATTGAGCACGAGCCGATAGTCCTCCATCAGTACAACAAAGTAGCCGCAGATTTGCGCGAAACGGCGGTCGTGGTGTGCCGCGTGCAGGCCTATCCGAAGCCCGAGTTTCAGTGGTCTTTCGGCACAAACACGGCACCCCTCTCGATGGGCTCCGAGGCTCACTACGAGATCAACACACAGAGCGACAACAACGACATCTACACTAGCACACTGAAAATTCATAACGTCCGTCACATGGACTACGGTGACTACAACTGTCGCGCATCGAACTCCCTCGAGACGATTCGAGCGCCGATCCGCTTGCAGCCAAAAGGTTCTCCAGAAAAACCGACCAACCTCGACACGGCCGACATCGGTTCGAACTTCATCTCACTCAATTGGACACCCGGCTTCGACGGCGGTCTCAGCAATACGAAATTCTTCGTGTTATATCGAAAAGTATCGATTCCAAGCAATGAGGTGAACGGCGATTGCGGCTCCTACTATACGTCGTCGCCCGACTGGTCGGAGTTTGATTGCCATCGGAACTACCCGTGCAACATCACGCCGCTCGACCAGCACTCGAGCTACGTCTTCAAAGTGAAGGCGATGAACACGAAGGGCAATTCGGAATATTCGAGCGAAATTACGAGGACGACAAAGGTCAGCAAAATCCCATCTGCATTACGTGTCTCGTACGATCCGTCGACAAAAATGTTGGGTATAAATGTCGGTCAAACATGCCTCGCTCTTACGGCCGTTGTGGAGACGCTGCTACATGCCGAAACACATGTACCCGAATGGCACATTGTCGGACAGATTCCGCTGCAGGCCTCCGGCAATGCGCCGACATTTAAGGAATCGATTGTCGAGAACATCATCGTGCCACGAAGAAGTGCTGCGCGCTCATTAGAAGACGAAGAGGACTTTACGATGGCTCTCGAGGACGAGAGCATGCCACGTGTGCGAGTCAAGTTATGCCTGCGAGGAAACCCCGAGCATTGTGGCGAGTACATCGGAGCTGAGATCGGTCCATCGTACATTCAGGACGTGGCGTCAATTAACATGCCAACATTGGTGGCAATCGTCGTGTCGTGCATCGTTTTTGCCCTCTTCATCGGACTGCTGCTCATGTTCTGTCGCTGCAAGAAGAAGCAAACGAAAAAGAGTGTTCAGGCCAAGGACTACGAAATGGACTCGGTTCGGCCGTCGATTGTTGCGCAGCAAAACCAAGCACCCCCACCATACTACCCGGCCAGCGGCCTCGAGAATAAGGCACTCGAGCACTCAATGGATCTCGCCTTAGCCATGGAGGACCAGAAAACTGCCATCTATAGCCAAAACGGATACGGTTACAATGGCGGTCTGCAAGTGCCATCACACAACATCCCTCCCGATTTCAAC
Protein: 846 (aa)
MLYYPRVEVGPENPLRVERDGTAKLDCNVDAKPKVANVRWTRGGRFISSSFSHTIHRVSVQDAGEYECTADNGLGQTGSGKVTLDVLFAPVVVIETKTREAEERESISIKCNVTSNPPPVEVEWVKEGSPEFRQSSDVLALNDIRAEHAGTYVCRGINNMRPFGVKATERVGNSTVAVLVRHRPGKAVITPNKPVVHVGNSVTFTCSANPPGWPVPQFRWFRDAEGEISTQKVLSQGPQYVIPRAHLGSEGRYHCHAANELGHGEMATITLEVHQPPQFLAKLQQHLTRRVGDSDFSVSCSAKGKPKPAVKWFKDGRELTGEANFYEITTSPNEGPNGMVTVQSNLKFYGKGRPNQNQLLPNDRGTYSCVYQNEVNSANSTMHLKIEHEPIVLHQYNKVAADLRETAVVVCRVQAYPKPEFQWSFGTNTAPLSMGSEAHYEINTQSDNNDIYTSTLKIHNVRHMDYGDYNCRASNSLETIRAPIRLQPKGSPEKPTNLDTADIGSNFISLNWTPGFDGGLSNTKFFVLYRKVSIPSNEVNGDCGSYYTSSPDWSEFDCHRNYPCNITPLDQHSSYVFKVKAMNTKGNSEYSSEITRTTKVSKIPSALRVSYDPSTKMLGINVGQTCLALTAVVETLLHAETHVPEWHIVGQIPLQASGNAPTFKESIVENIIVPRRSAARSLEDEEDFTMALEDESMPRVRVKLCLRGNPEHCGEYIGAEIGPSYIQDVASINMPTLVAIVVSCIVFALFIGLLLMFCRCKKKQTKKSVQAKDYEMDSVRPSIVAQQNQAPPPYYPASGLENKALEHSMDLALAMEDQKTAIYSQNGYGYNGGLQVPSHNIPPDFN
| Type | Start | End | Length |
| CDS |
309 |
313 |
5 |
| CDS |
1175 |
1546 |
372 |
| CDS |
2242 |
4395 |
2154 |
| CDS |
6445 |
6451 |
7 |
| intron |
314 |
1174 |
861 |
| intron |
1547 |
2241 |
695 |
| intron |
4396 |
6444 |
2049 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001656494 |
echinoid [Aedes aegypti] gb|EAT45579.1| echinoid [Aedes aegypti] |
0.0 |
| InterPro |
IPR003598 |
Immunoglobulin subtype 2 |
|
| InterPro |
IPR007110 |
Immunoglobulin-like |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR003599 |
Immunoglobulin subtype |
|
| InterPro |
IPR003961 |
Fibronectin, type III |
|
| InterPro |
IPR013098 |
Immunoglobulin I-set |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00047.20 |
Immunoglobulin domain |
3e-24 |
| Pfam |
PF08205.7 |
CD80-like C2-set immunoglobulin domain |
5.1e-14 |
| Pfam |
PF07679.11 |
Immunoglobulin I-set domain |
1.2e-46 |
| Pfam |
PF08204.6 |
CD47 immunoglobulin-like domain |
1.1 |
| Pfam |
PF06328.6 |
Ig-like C2-type domain |
0.0028 |
| Pfam |
PF07654.10 |
Immunoglobulin C1-set domain |
3.5e-07 |
| Pfam |
PF00041.16 |
Fibronectin type III domain |
9.8e-10 |
| Pfam |
PF04156.9 |
IncA protein |
0.037 |
| Pfam |
PF13927.1 |
Immunoglobulin domain |
3e-32 |
| Pfam |
PF13895.1 |
Immunoglobulin domain |
1.1e-53 |
| Pfam |
PF07686.12 |
Immunoglobulin V-set domain |
1.1e-17 |
| Pfam |
PF10386.4 |
Protein of unknown function (DUF2441) |
0.049 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ003135 |
| S. invicta |
SI2.2.0_80547 |
| A. aegypti |
AAEL004133 |
| H. melpomene |
HMEL008765-PA |
| A. gambiae |
AGAP010184 |
| C. quinquefasciatus |
CPIJ010928 |
| A. aegypti |
AAEL003169 |
| A. gambiae |
AGAP010186 |
| D. melanogaster |
FBgn0051774 |
| D. plexippus |
DPOGS208547PA |
| P. vanderplanki |
Pv.08810 |
| N. vitripennis |
NV11363-PA |
| A. mellifera |
GB13261-PA |
| B. mori |
BGIBMGA010335-TA |
| D. melanogaster |
FBgn0000547 |
| P. humanus |
PHUM153960-PA |
| T. castaneum |
TC012257 |