MidgeBase gene description page [Pn.14193]
Outline
| Gene ID | Pn.14193 |
| Type | Protein coding gene |
| Scaffold | PnScaf23034 |
| Start | 15938 |
| End | 28717 |
| Direction | - |
Sequence
Transcript: 2175 (bp)
ATGAATGCAAATTACGAAAATTTTAATAATAATGAAGAAAACGAAGAGCTGGTGTACAACTTCGAAAAGCTCCTCAATTTGCTGCAAGAAATTTCAACATCGACGGAAACAACAAGCTTACAGATAAAAATTAATTTGTATCTACGAGAGTTGTTGGGTGCAGAGTATGTTTTAATTGTTCCACTCTTGCCGCCAAGCGAGGAAACTCAAACGCAGTGTGAAGGACTGATACACGTTGTGAACGACAGAGTTCTCGAGAAGGAATTCCGATTCTCGGTGAACACATCCGACGTAGAGAATTCGTCAAGCGAACTGAACGATCATCCATTTAACCATATTCATCTGACAGATTTAAATAAAAGCTTCGCAGAAGTCATTGAGATGGTTGTCGGAAAGGAGCACAACACACTAATTTTCAACGTCAAAGGCCCCAACCCGCACCAGTCCTTGAAGCATTACAACGCGCTTTTCGTGTGCATAGCCGGCGAGAGCTCGCAGAGGGCGAAATTTGAATTTTATGTTCAGCATACGTTTCGCTATGTGCTCGGCCAACTGTTGACAGCATTTGAGCTTTATGAGGAGAAGCGCATTCGTCTTCAGTGTCAGAATTTGCTACAAGTCGCACGACGTTTGCTGAGCAAAATTGGCGACCTGGGACAGCTTTTGCGCGGCGTCATGGCCGAGGCACGTGAGCTGGCCAAAGCGGAAAGGTGTTCGCTGTTCCTAATAGACAAAGACACGGGCGAGTTGGTGTCGAAAGTGTTCGATGGCAATGCAATCACGAAGCAATCAAAGCAATCGAAGGAAGTGCGGATAAGCGGCAATCAAGGGATTGCGGGGCATGTAGCGCAAACCGGACGACTACTTAACATTCACAATGCATATCAACATCCGCTCTTTTATAAGGGCATCGACGAGCAGACGGGCTTCAAGACGAGAAACATCCTGTGCTTTCCGATTTGCGACGAGGAGTCGCGAGTCATTGGCGTGGCTCAGCTGTGCAACAAACTCGACGGCTTTCACTTCGACAAGTGCGACGAGGAGACGAGTCGGGCGTTTTCGGTGTACTGCGGAATCACGATAATGCACAGCATCGTGCACAAGCGGGTGCAAAAGGCCGAGGCGCGCTACAAATTGTCGCAGGAGCTCTTACTCTATCACATGAAAGTCCCCGAGCTCGACATCATAAATTGCCTCAACCGCTCCTCGCTCGAGTCTGTCGTCGAGAATTTTCCGAATTTCGCGAGCTTCGACTTTTGTCCGCGCGACGTCGACGACCACAGCTCCATTTACATTTGCATGCAGATGTTCATTGACCTGAACTTCATCACGGAATTTAAGATTCCCGAGGACAAGCTCGCGCGCTTCCTGATGTTGGTGCAGAAGGGCTATCGGAACATGCCCTACCACAACTGGCATCATGCATTTAGTGTCACGCATTTCTCCTACGCTTGCATGAAGAACCTCAAGCTCATCGAGCGCGGTATCATCACGAAGCTCCAGGGACTGTCGTTTCTCATCTCCTGCTTGTGCCACGACTTGGATCACCGCGGTTTCAACAACTCGTATATGACGCAGACGGGCAGCATGTTGGCACGACTTTACAGTTCGGAGGGCAGCATCAACGAGAGACACCACTTGTCGCAAGCAATATGCATTCTCAACGACCCGGGCAGCAAGATCCTCGACTCGCTATCGACGGAGCAATTTATGGAGTCGATTGATTACTTGCGCGAGCTAATATTGGCGACAGACCTGGCCAATCACTTTCGCATCTTCAAGGATTTGAAGAATCTTACGTCGGACAACATTAAGGACAGCTCGAGGCTGCTGCTTTCGCTGCTGATTACGTGCTCGGACTTGAACGATCAAATAAAGTCATGGTCGACTGTGTATCGAGTGGCCGAGCTTGTCTACACGGAGTTCTTCACGCAAGGAGATTTGGAGAAGCAAATGGGCATGTCACCAAACTTGATGTTCGACCGGAAGAAGGCGAACGTGCCGGCACTGCAGATTGAGTTCCTCGACACTGTCGTGAAGCCGACTTATGAGGTGTTTGTGCAAATCTTTCCCGAGACCTCGCAGTTCCTGGAAACTATCACCGTAAATCGCCAGCACTGGATAGAGATAAAGGAGAGCGATGAGAAGGCTAGCAAAAATGGCGGCAGTCCAAAA
Protein: 725 (aa)
MNANYENFNNNEENEELVYNFEKLLNLLQEISTSTETTSLQIKINLYLRELLGAEYVLIVPLLPPSEETQTQCEGLIHVVNDRVLEKEFRFSVNTSDVENSSSELNDHPFNHIHLTDLNKSFAEVIEMVVGKEHNTLIFNVKGPNPHQSLKHYNALFVCIAGESSQRAKFEFYVQHTFRYVLGQLLTAFELYEEKRIRLQCQNLLQVARRLLSKIGDLGQLLRGVMAEARELAKAERCSLFLIDKDTGELVSKVFDGNAITKQSKQSKEVRISGNQGIAGHVAQTGRLLNIHNAYQHPLFYKGIDEQTGFKTRNILCFPICDEESRVIGVAQLCNKLDGFHFDKCDEETSRAFSVYCGITIMHSIVHKRVQKAEARYKLSQELLLYHMKVPELDIINCLNRSSLESVVENFPNFASFDFCPRDVDDHSSIYICMQMFIDLNFITEFKIPEDKLARFLMLVQKGYRNMPYHNWHHAFSVTHFSYACMKNLKLIERGIITKLQGLSFLISCLCHDLDHRGFNNSYMTQTGSMLARLYSSEGSINERHHLSQAICILNDPGSKILDSLSTEQFMESIDYLRELILATDLANHFRIFKDLKNLTSDNIKDSSRLLLSLLITCSDLNDQIKSWSTVYRVAELVYTEFFTQGDLEKQMGMSPNLMFDRKKANVPALQIEFLDTVVKPTYEVFVQIFPETSQFLETITVNRQHWIEIKESDEKASKNGGSPK
| Type | Start | End | Length |
| CDS |
15941 |
16572 |
632 |
| CDS |
16635 |
17641 |
1007 |
| CDS |
17743 |
17894 |
152 |
| CDS |
22882 |
22989 |
108 |
| CDS |
28442 |
28717 |
276 |
| intron |
16573 |
16634 |
62 |
| intron |
17642 |
17742 |
101 |
| intron |
17895 |
22881 |
4987 |
| intron |
22990 |
28441 |
5452 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_317162 |
AGAP008304-PA [Anopheles gambiae str. PEST] gb|EAA12229.4| AGAP008304-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR002073 |
3'5'-cyclic nucleotide phosphodiesterase, catalytic domain |
|
| InterPro |
IPR023174 |
3'5'-cyclic nucleotide phosphodiesterase, conserved site |
|
| InterPro |
IPR023088 |
3'5'-cyclic nucleotide phosphodiesterase |
|
| InterPro |
IPR003607 |
HD/PDEase domain |
|
| InterPro |
IPR003018 |
GAF domain |
|
| Gene Ontology(BP) |
GO:0007165 |
signal transduction |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0004114 |
3',5'-cyclic-nucleotide phosphodiesterase activity |
|
| Gene Ontology(MF) |
GO:0008081 |
phosphoric diester hydrolase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF13185.1 |
GAF domain |
3.7e-08 |
| Pfam |
PF13492.1 |
GAF domain |
1.1e-12 |
| Pfam |
PF01590.21 |
GAF domain |
8.2e-22 |
| Pfam |
PF00233.14 |
3'5'-cyclic nucleotide phosphodiesterase |
5.8e-72 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| N. vitripennis |
NV21331-PA |
| N. vitripennis |
NV12045-PA |
| A. mellifera |
GB13697-PA |
| H. sapiens |
ENSP00000410310 |
| M. musculus |
ENSMUSG00000030653 |
| P. vanderplanki |
Pv.05194 |
| N. vitripennis |
NV19083-PA |
| H. sapiens |
ENSP00000439077 |
| H. sapiens |
ENSP00000442256 |
| C. quinquefasciatus |
CPIJ017046 |
| H. melpomene |
HMEL003651-PA |
| A. gambiae |
AGAP008304 |
| H. sapiens |
ENSP00000392457 |
| S. invicta |
SI2.2.0_09269 |
| D. plexippus |
DPOGS202822PA |
| H. sapiens |
ENSP00000365633 |
| H. sapiens |
ENSP00000334910 |
| H. sapiens |
ENSP00000411657 |
| A. aegypti |
AAEL001492 |
| B. mori |
BGIBMGA010521-TA |
| H. sapiens |
ENSP00000446399 |
| N. vitripennis |
NV12335-PA |
| N. vitripennis |
NV22871-PA |