MidgeBase gene description page [Pn.14164]
Outline
| Gene ID | Pn.14164 |
| Type | Protein coding gene |
| Scaffold | PnScaf22888 |
| Start | 9632 |
| End | 13690 |
| Direction | - |
Sequence
Transcript: 3672 (bp)
ATGAGTACATTCTTGGAATTCATCGAAATCGAGAATTTCAAGAGTTACAAGGGAAAAGTGGTGATAGGTCCTTTGAAAAAATTCACTGCAGTAATTGGACCAAATGGAAGCGGCAAATCAAACTTCATGGACGCCATTTCCTTCGTCATGGGAGAGAAAACAACTTCCCTCCGAGTGAAAAAACTCGGCGATTTGATTCATGGTGCATCGATCGGAAGACCAATATCCAGACACGCCTCAGTCACGGCCAAGTTCAAGTTGAACGACGGAACGGATGTCAGTTTTCAGCGAGCCGTCTCTGGATCTTCGTCCGACTACAAGATCAACAACCAAAGCGTATCCAGCAACACGTATTTGTCGGAGCTCGAGAAGATGGGCATCAATGTGAAGGCAAAGAACTTCCTGGTCTTCCAGGGAGCTGTCGAAAACATTGCGATGAAGAACGCCAAAGAGCGCACTCAGCTGTTCGAGGAAATCAGCACGTCGGGACTGCTGAAGGAGGAGTACAACACGCTGAAGCAAGAGATGATGAGCGCCGAGGAAGAGACGCAGTTCACCTATCAGAAGAAGAAGGGAGTTGCTGCGGAAAGAAAGGAGGCAAAGCTCGAGAAGCAGGAAGCTGATCGCTATTCCCGCTTGCGCGAGGAGTACACGGAAAAGCAAATTTTGTATCAACTTTACAAGCTGTATCACAATGAGAAGGACATCCAGCGCTACAACGACGACCTGAAGTCGAAGCAGCAAGAGCTGAAGAAGCTCGAAGACAAGAAGACTCGCGCCGACGAGGTTCTGAAGGATAAGAAAAAGGAGGGCGGCAAAATAAGTCGAGATTTGGCGAAGATCGAGCAGGACATTCGAGAGGCCGAGAGCGACATGAACAAGAAGCATCCGCTCTACATCAAGGCGAAGGAGAAGGTCGCTCACACCCAAAAGAAACTCGACGGTGCAATGAAAACGCTCGAGCAGGCGAAAAAGGCAGACGAAGCGCATCAGTTGGACATTCGCAAGTTGGAGGAAGAACTGCAGAACATTGTCGACAAGAAGAAGGAGTTTGAGTCGGAAATCGCGATGGACTCAAAGAAGCGCGGCAGCAACGTTCACTTGGAGCAAGATTTTCTCAAAGAGTACGATCGTTTGAAGCAGCAGGCGGACTTGAAGTCGGCCAAGTATCTCGCAAAACTCGACAGCATCAACCGCGAGCAAAAGTCCGATCAAGATCTGCTCGATTCTGAGATTAACAAGAAGACGCAGCTGGAGGAGACGCTGAAGAAGTACAGCAGTGAGAAAGAGGAGGCGATTAAGCGCAAGGAGAAGCTGTACGAGCACATCCGATCGAGCGAGGCTCAGCTCGCCGAACAAATGCGCAACAAAGAGGAGCTCAGCAAAGACGTTGGCTGCTCGAGGGAGCGTCAGCTCGAGTTGCAGCGCGAGATCCTGGACGTTAATGAGCAGCTCGGCGATGCCAAAAACGACAAGCACGAGGACGCGCGAAGGAAGAAAAAGCAAGAAGTGGTAGAGATGTTCAAGCGCGAAATTCCCGGTGTTTACGATCGAATGATCAACATGTGTCAGCCGACAAACAAGCGATACAATGTTGCGGTCACAAAGGTGCTGGGGAAGTACATGGAAGCCATCATTGTCGACACTGAGAGAACTGCGCGAAAATGCATTCAAATGCTGAAAGATCAAAAGCTCGAGGTCGAAACGTTTCTTCCGCTTGATTACTTGCAGGCTAAACCGCTTAAAGAGAGATTAAGAACCATTCAGAATCCAAAGGGAGTTCACCTGATCTACGATGTTCTTCGCTTCGATCCGCCTGACATCGAGAGAGCCGTACTCTTCGCCACCAACAACGCCCTGGTCTGCGAGTCGCCCGAGGATGCCATGAAGGTCGCCTACGAAATGGATCGCAGTCGTTACGACGCCCTCGCTCTCGACGGAACCTTCTACCAAAAGTCAGGTATCATTTCGGGCGGCTCGCACGATTTGGCGCGTAAGGCAAAGCGCTGGGACGAGAAGCACATGAACCAGCTGAAGCTGCAGAAGGAGCGCCTCAACGAGGAGCTCAAAGACGTCACGAAGAAGACGCGAAAGCAGAGCGAGCTGACGACGATCGAATCTCAAATCAAGGGCATCGAGAATCGCCTAAAGTACAGCCGGAATGACTTGGCCAATAGCGACAAGTCGATTCGCGATTTCGAGCGATCGATGAACGACCTGAGGAAGGAGTTGGATCTGATTGGACCGAACATCAGCGAGATCGAGCGCCGCATGATGAATCGCGATGCGAAAATCCAGGAGATGAGGGGAAAGATGAACACCGTCGAGGACGAGTACTTCAAGGGATTCTGCAAGAAAATCGGCGTCTCAAACATCCGCCAGTACGAGGACCGCGAGCTTGTGCTGCAGCAGGAGCGCGACAAGAAACTCGCTGAATTCGAGCAGCAAATCGATCGCATCAACACCAACCTGGACTTTGAGAGAAGCAAGGACACATCGAAGAATGTCCAGCGATGGGAGCGAACGGTGCAGGACGACGAGGACTCGCTCGAGTCGCTGAAGCAGGCGGAGAAGCGTCATCGCGACGAAATCGAAAAGGACAAGGAGAAAATCGAGACGCTCAAGTTGGACAAGCAAAACAAGAAGAAGCTGGTCGACGAGATGGAGGAGGACACGGCAAAGGCGCGTCGCGATGTCGCTTCCCTCGCCAAGGACATCGCGACACTTTCGCACCAAATTTCCTCGATCGAGAACAAGGTCGATTCGAAGCGAAACGACCGACTCAACATGCTGCGCCAGTGCAAGATGGACGACATCCAGATCCCGATGCTGGGTCACTCGAGTCTGGACGACATCCTGCAGGAGCAGGAGACCAACGATCCCTCGTCTGCAGCCACAATGTCCAACAGCATGCTCTCGAAAATCAACGAGATTCAGATCGACTACCGAAATATTCCGCGCAACCTCAAGGACATCGACGAGCCGGATCAGGTGAAGAAGTCGGGCGATGCGCTCAACAAGGAGCTCCAGCAGAAGCTCGACACGCTCGAGAAGATCCAGACGCCCAACATGAAGGCTTTGCAGAAGCTCGACGCGGTGGCCGAGAAAATTCAGACGACCAACGAGGAGTTCGAGAATGCGAAGAAGAAGGCGAAAAAGGCGAAGGCGGCGTTCGAGAAGATCAAAAACGAGCGCATCACGCGCTTCAACAAGTGTCTCAATCACATTTCCGAAGCCATTGACGGCATATACAAGGCGCTCTCGCGCAACGACGCCGCCCAGGCCTTCCTCAACCCCGACAATCCCGAGGAGTCGTATCTAGACGGCATCAACTACAACTGCGTCGCGCCCGGCAAGCGCTTCCAGCCGATGAGCAACCTGAGTGGTGGCGAGAAGACAATCGCGGCACTTGCGCTCCTCTTTGCCATCCACAGCTACCAGCCGGCGCCTTTCTTCGTGCTGGACGAGATCGACGCCGCTCTCGACAACACGAACATCGGAAAGGTGGCGAAGTATATTCGCGAGCAGCACGACCTCCAGACGATCGTCATTTCGCTGAAGGAGGAGTTCTATGGACATGCGGACATTCTGATTGGAATCACGCCGCAGCCGGCCGACTGCTTGGTCTCACGCACTTACCTCTACGATTTGACAAACTTTGAGAGTAACGAC
Protein: 1224 (aa)
MSTFLEFIEIENFKSYKGKVVIGPLKKFTAVIGPNGSGKSNFMDAISFVMGEKTTSLRVKKLGDLIHGASIGRPISRHASVTAKFKLNDGTDVSFQRAVSGSSSDYKINNQSVSSNTYLSELEKMGINVKAKNFLVFQGAVENIAMKNAKERTQLFEEISTSGLLKEEYNTLKQEMMSAEEETQFTYQKKKGVAAERKEAKLEKQEADRYSRLREEYTEKQILYQLYKLYHNEKDIQRYNDDLKSKQQELKKLEDKKTRADEVLKDKKKEGGKISRDLAKIEQDIREAESDMNKKHPLYIKAKEKVAHTQKKLDGAMKTLEQAKKADEAHQLDIRKLEEELQNIVDKKKEFESEIAMDSKKRGSNVHLEQDFLKEYDRLKQQADLKSAKYLAKLDSINREQKSDQDLLDSEINKKTQLEETLKKYSSEKEEAIKRKEKLYEHIRSSEAQLAEQMRNKEELSKDVGCSRERQLELQREILDVNEQLGDAKNDKHEDARRKKKQEVVEMFKREIPGVYDRMINMCQPTNKRYNVAVTKVLGKYMEAIIVDTERTARKCIQMLKDQKLEVETFLPLDYLQAKPLKERLRTIQNPKGVHLIYDVLRFDPPDIERAVLFATNNALVCESPEDAMKVAYEMDRSRYDALALDGTFYQKSGIISGGSHDLARKAKRWDEKHMNQLKLQKERLNEELKDVTKKTRKQSELTTIESQIKGIENRLKYSRNDLANSDKSIRDFERSMNDLRKELDLIGPNISEIERRMMNRDAKIQEMRGKMNTVEDEYFKGFCKKIGVSNIRQYEDRELVLQQERDKKLAEFEQQIDRINTNLDFERSKDTSKNVQRWERTVQDDEDSLESLKQAEKRHRDEIEKDKEKIETLKLDKQNKKKLVDEMEEDTAKARRDVASLAKDIATLSHQISSIENKVDSKRNDRLNMLRQCKMDDIQIPMLGHSSLDDILQEQETNDPSSAATMSNSMLSKINEIQIDYRNIPRNLKDIDEPDQVKKSGDALNKELQQKLDTLEKIQTPNMKALQKLDAVAEKIQTTNEEFENAKKKAKKAKAAFEKIKNERITRFNKCLNHISEAIDGIYKALSRNDAAQAFLNPDNPEESYLDGINYNCVAPGKRFQPMSNLSGGEKTIAALALLFAIHSYQPAPFFVLDEIDAALDNTNIGKVAKYIREQHDLQTIVISLKEEFYGHADILIGITPQPADCLVSRTYLYDLTNFESND
| Type | Start | End | Length |
| CDS |
9635 |
11549 |
1915 |
| CDS |
11875 |
13519 |
1645 |
| CDS |
13579 |
13690 |
112 |
| intron |
11550 |
11874 |
325 |
| intron |
13520 |
13578 |
59 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001862294 |
structural maintenance of chromosomes protein 1A [Culex quinquefasciatus] gb|EDS36832.1| structural maintenance of chromosomes protein 1A [Culex quinquefasciatus] |
0.0 |
| InterPro |
IPR010935 |
SMCs flexible hinge |
|
| InterPro |
IPR003395 |
RecF/RecN/SMC |
|
| Gene Ontology(BP) |
GO:0051276 |
chromosome organization |
|
| Gene Ontology(CC) |
GO:0005694 |
chromosome |
|
| Gene Ontology(MF) |
GO:0005524 |
ATP binding |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
2.9e-07 |
| Pfam |
PF13558.1 |
Putative exonuclease SbcCD, C subunit |
0.0064 |
| Pfam |
PF02463.14 |
RecF/RecN/SMC N terminal domain |
6e-158 |
| Pfam |
PF06470.8 |
SMC proteins Flexible Hinge Domain |
1.8e-22 |
| Pfam |
PF13166.1 |
AAA domain |
0.0012 |
| Pfam |
PF13476.1 |
AAA domain |
1.8e-11 |
| Pfam |
PF04582.7 |
Reovirus sigma C capsid protein |
0.01 |
| Pfam |
PF06009.7 |
Laminin Domain II |
0.0083 |
| Pfam |
PF13401.1 |
AAA domain |
0.014 |
| Pfam |
PF13304.1 |
AAA domain |
5.3e-06 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. mellifera |
GB17522-PA |
| D. melanogaster |
FBgn0040283 |
| H. sapiens |
ENSP00000364489 |
| H. sapiens |
ENSP00000350036 |
| M. musculus |
ENSMUSG00000022432 |
| A. aegypti |
AAEL005802 |
| H. sapiens |
ENSP00000323421 |
| D. plexippus |
DPOGS205700PA |
| H. sapiens |
ENSP00000385902 |
| N. vitripennis |
NV15569-PA |
| M. musculus |
ENSMUSG00000041133 |
| A. aegypti |
AAEL015592 |
| P. humanus |
PHUM470210-PA |
| H. melpomene |
HMEL014798-PA |
| T. castaneum |
TC005672 |
| S. invicta |
SI2.2.0_06038 |
| C. quinquefasciatus |
CPIJ012027 |
| P. vanderplanki |
Pv.06262 |
| A. gambiae |
AGAP002947 |
| B. mori |
BGIBMGA009835-TA |