MidgeBase gene description page [Pn.14155]
Outline
| Gene ID | Pn.14155 |
| Type | Protein coding gene |
| Scaffold | PnScaf22839 |
| Start | 2116 |
| End | 3545 |
| Direction | - |
Sequence
Transcript: 1197 (bp)
ATGTCTCTCACTCCAGCTCAACTCACAAAATATCTGGCAAAGTATAAAAATATCACCGCTACCAAGAAAGATGTTCTGCAGGCAATGGAACAGTATAGAGCACTGGTATTCCGCCAAGACTCGTACGTTTTCAACGACGGGACCAGAAAGGATTTGCTAAATCTAACTGGGACTATTCCAGTGATTTACAAAAAAAACACTTATCACATCCCAATCTGCATTTGGATAATGGACACACACCCTGCAAACGCGCCAATTTGTTATGTTACACCGACCTCTAACATGCACATTAAAGTGAGCATGTATGTTGACCACAATGGAAAAGTCTATTTGCCATATCTGCATGATTGGTCTCCAAATACCAGTGACTTGTTGGGACTGATTCAAGTTATGATTGTGACTTTTGGTGAACATCCTCCCGTTTATTCAAAGCCGAAGGAAGCGACACCTTACCCTCAGCAGTCGTTCATGCCTCAACCGGGAGGCATGAGTCAGTCACAATTTCAATATCCACCAGCGTCTGGCGGCTTTCCACCGTACCCACCTGCTTCAGGCGGTTCCAGTTTCGGCGCATTTCCCTACCCTCCTACTCAACCTAATTCTGCTCTTTATCCTGCGACTGGCTTCATGTCACCAATGCCGTCAAATTCATTCAACTCACCGACTCAGAACAACAATGCTGCTGGCACAGGAACAATAACTGAAGAACACATCAAGGCCTCACTCATTTCGGCCGTTGAAGACAAGATGAAGCGTCGAATTCAAGAGAAAGTCAATCAGTATCAAGCTGAAATCCAAACGCTAAAGCGAACCAAGCAGGAACTCGTCGAGGGCCAGAACAAGTTGACCGAAATTATGAATAAACTGGAGCGTGATGAAGCTGAATTGAAGAAAAACATTCAGTTACTGCAAGATAAGGATGCCGAGTTGACAAAGTCACTGGAACAATTGGAACAGAACGATGAAATCGATGTTGACGAAGCCGTTCAGACAACAGCTCCTCTCTATAAACAGTTAATTAACGCATACGCTGAGGAAGCAGCTATCGAAGATGCAATTTATTATTTGGGAGAAGCACTAAGAAAAGGAGTCATCGATCTTGAAGTGTTCTTAAAAAAAGTACGTCAGTTAGCTCGAAAGCAGTTCATGAACCGTGCTCTGATGCAAAAATGTAGACAAAAAGCTGGTCTTGCTGGT
Protein: 399 (aa)
MSLTPAQLTKYLAKYKNITATKKDVLQAMEQYRALVFRQDSYVFNDGTRKDLLNLTGTIPVIYKKNTYHIPICIWIMDTHPANAPICYVTPTSNMHIKVSMYVDHNGKVYLPYLHDWSPNTSDLLGLIQVMIVTFGEHPPVYSKPKEATPYPQQSFMPQPGGMSQSQFQYPPASGGFPPYPPASGGSSFGAFPYPPTQPNSALYPATGFMSPMPSNSFNSPTQNNNAAGTGTITEEHIKASLISAVEDKMKRRIQEKVNQYQAEIQTLKRTKQELVEGQNKLTEIMNKLERDEAELKKNIQLLQDKDAELTKSLEQLEQNDEIDVDEAVQTTAPLYKQLINAYAEEAAIEDAIYYLGEALRKGVIDLEVFLKKVRQLARKQFMNRALMQKCRQKAGLAG
| Type | Start | End | Length |
| CDS |
2119 |
2302 |
184 |
| CDS |
2373 |
3192 |
820 |
| CDS |
3257 |
3407 |
151 |
| CDS |
3504 |
3545 |
42 |
| intron |
2303 |
2372 |
70 |
| intron |
3193 |
3256 |
64 |
| intron |
3408 |
3503 |
96 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002046693 |
GJ12339 [Drosophila virilis] gb|EDW69035.1| GJ12339 [Drosophila virilis] |
1e-148 |
| InterPro |
IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
|
| InterPro |
IPR008883 |
Ubiquitin E2 variant, N-terminal |
|
| InterPro |
IPR017916 |
Steadiness box |
|
| Gene Ontology(BP) |
GO:0006464 |
protein modification process |
|
| Gene Ontology(BP) |
GO:0015031 |
protein transport |
|
| Pfam |
PF03961.8 |
Protein of unknown function (DUF342) |
0.015 |
| Pfam |
PF02403.17 |
Seryl-tRNA synthetase N-terminal domain |
8.2 |
| Pfam |
PF03938.9 |
Outer membrane protein (OmpH-like) |
2.7 |
| Pfam |
PF10211.4 |
Axonemal dynein light chain |
2.8 |
| Pfam |
PF05743.8 |
UEV domain |
5e-43 |
| Pfam |
PF09177.6 |
Syntaxin 6, N-terminal |
1.4 |
| Pfam |
PF07106.8 |
Tat binding protein 1(TBP-1)-interacting protein (TBPIP) |
0.14 |
| Pfam |
PF08647.6 |
BRE1 E3 ubiquitin ligase |
5.2 |
| Pfam |
PF10186.4 |
UV radiation resistance protein and autophagy-related subunit 14 |
8.3 |
| Pfam |
PF05929.6 |
Phage capsid scaffolding protein (GPO) serine peptidase |
0.32 |
| Pfam |
PF09454.5 |
Vps23 core domain |
2.6e-27 |
| Pfam |
PF10459.4 |
Peptidase S46 |
3.2 |
| Pfam |
PF00769.14 |
Ezrin/radixin/moesin family |
0.01 |
| Pfam |
PF01496.14 |
V-type ATPase 116kDa subunit family |
0.016 |
| Pfam |
PF04111.7 |
Autophagy protein Apg6 |
7.6 |
| Pfam |
PF09726.4 |
Transmembrane protein |
0.0088 |
| Pfam |
PF12329.3 |
TATA element modulatory factor 1 DNA binding |
0.12 |
| Pfam |
PF05064.8 |
Nsp1-like C-terminal region |
0.58 |
| Pfam |
PF05531.7 |
Nucleopolyhedrovirus P10 protein |
6.4 |
| Pfam |
PF13166.1 |
AAA domain |
0.86 |
| Pfam |
PF05852.6 |
Gammaherpesvirus protein of unknown function (DUF848) |
3.5 |
| Pfam |
PF03962.10 |
Mnd1 family |
0.0085 |
| Pfam |
PF04156.9 |
IncA protein |
8.8 |
| Pfam |
PF10241.4 |
Uncharacterized conserved protein |
0.75 |
| Pfam |
PF12614.3 |
Ribosome recycling factor |
0.37 |
| Pfam |
PF08286.6 |
Spc24 subunit of Ndc80 |
1.2 |
| Pfam |
PF01763.11 |
Herpesvirus UL6 like |
0.02 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000014402 |
| A. aegypti |
AAEL012515 |
| A. mellifera |
GB17037-PA |
| H. sapiens |
ENSP00000349721 |
| P. humanus |
PHUM537110-PA |
| N. vitripennis |
NV17371-PA |
| H. sapiens |
ENSP00000438471 |
| D. melanogaster |
FBgn0036666 |
| T. castaneum |
TC002425 |
| H. sapiens |
ENSP00000251968 |
| A. gambiae |
AGAP005934 |
| D. plexippus |
DPOGS214321PA |
| C. quinquefasciatus |
CPIJ006913 |
| H. melpomene |
HMEL006358-PA |
| B. mori |
BGIBMGA004136-TA |
| P. vanderplanki |
Pv.04129 |