MidgeBase gene description page [Pn.14140]
Outline
| Gene ID | Pn.14140 |
| Type | Protein coding gene |
| Scaffold | PnScaf22749 |
| Start | 1216 |
| End | 2483 |
| Direction | - |
Sequence
Transcript: 960 (bp)
ATGAAAAATTACGTAGAGGCCAATATATCACACAAATCACATACTACTATAAAGTATGCCTTGAAGATGCTGTCCAGCTCGTCAGAAACAATTATTTTCATTTTTCTGGGAGTTGCGACAGTAAATAACGCTCACCAATGGAATACATGGTTCATAGTTTTGACTGTGACATTCTGTTCAGTTTTTCGCGTGATAGGCGTAATTGTGCTCGTTGCAATCGCCAATCGATTTAGAATTCATAAGCTTTCGAATGTTGATCAATTCGTCATGTCATATGGCGGTCTGAGAGGTGCAATTGCTTTCGCGTTGGTTCTCCTTATCGACCCTCATCATGTAGAGCTCGCTCCACTTTTCGTCACGACAACAATTTGCGTGATTTACTTCACCGTGTTCCTTCAGGGAATTACGATTAAGCCACTAGTTAGTATCTTGAAGGTCAAGCGCGCAGAGAAACGAAAGCCGACGATGAACGAGAGAATTCACGAGCGCTTTATTGATCACATGATGGCGGGCTTGGAGGACATTTGCGGAAAAACTGGAAACTATACCATTCGTGATAAATTCAAGCGTTTCGATAATCGATTCATTCGTCCATATTTGATTAGAGATCTTAAGGGAGCAGAGCCAAAGATCCTAGAGACTTATTCAAAATTAGCTATGAAAGATGCTATCGATATTATGCGTCGAAATCCTTCGACCATTGGCCAAATGACGGGAACCGAATCAATGAGTGCACTCTTCAGAAACTACACCGGTATACTGGGTGGAAGTCCGAGCTTTTCCAACTTTGAGTCGTCTACACGAAACTTGGACATGCAAGAATTGGACTACAATCCATCAAGAAAGGACTTGACGGACGCAAGGATTCATCATCTTCTAGCTGAGGAGCTGAAGCCTTACAGAAGAGTAAGTTTCCAATTTTCCATCCACTTTGTTATTTCTTTCAGTTGTAAGAAAATG
Protein: 320 (aa)
MKNYVEANISHKSHTTIKYALKMLSSSSETIIFIFLGVATVNNAHQWNTWFIVLTVTFCSVFRVIGVIVLVAIANRFRIHKLSNVDQFVMSYGGLRGAIAFALVLLIDPHHVELAPLFVTTTICVIYFTVFLQGITIKPLVSILKVKRAEKRKPTMNERIHERFIDHMMAGLEDICGKTGNYTIRDKFKRFDNRFIRPYLIRDLKGAEPKILETYSKLAMKDAIDIMRRNPSTIGQMTGTESMSALFRNYTGILGGSPSFSNFESSTRNLDMQELDYNPSRKDLTDARIHHLLAEELKPYRRVSFQFSIHFVISFSCKKM
| Type | Start | End | Length |
| CDS |
1219 |
1408 |
190 |
| CDS |
1475 |
1629 |
155 |
| CDS |
1687 |
2105 |
419 |
| CDS |
2288 |
2483 |
196 |
| intron |
1409 |
1474 |
66 |
| intron |
1630 |
1686 |
57 |
| intron |
2106 |
2287 |
182 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653402 |
sodium/hydrogen exchanger 3 (nhe3) [Aedes aegypti] gb|EAT47410.1| sodium/hydrogen exchanger 3 (nhe3) [Aedes aegypti] |
1e-153 |
| InterPro |
IPR004709 |
Na+/H+ exchanger |
|
| InterPro |
IPR018422 |
Cation/H+ exchanger, CPA1 family |
|
| InterPro |
IPR006153 |
Cation/H+ exchanger |
|
| InterPro |
IPR018416 |
Na+/H+ exchanger, isoforms 3/9 |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0006885 |
regulation of pH |
|
| Gene Ontology(BP) |
GO:0006812 |
cation transport |
|
| Gene Ontology(BP) |
GO:0006814 |
sodium ion transport |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0015385 |
sodium:hydrogen antiporter activity |
|
| Gene Ontology(MF) |
GO:0015299 |
solute:hydrogen antiporter activity |
|
| Pfam |
PF00999.16 |
Sodium/hydrogen exchanger family |
6.6e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.14141 |
| Pn.08150 |
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL003119-PA |
| N. vitripennis |
NV18667-PA |
| A. gambiae |
AGAP009036 |
| M. musculus |
ENSMUSG00000026062 |
| M. musculus |
ENSMUSG00000026065 |
| H. sapiens |
ENSP00000295269 |
| P. vanderplanki |
Pv.04633 |
| C. quinquefasciatus |
CPIJ009357 |
| M. musculus |
ENSMUSG00000036123 |
| H. sapiens |
ENSP00000233969 |
| D. melanogaster |
FBgn0040297 |
| H. sapiens |
ENSP00000363199 |
| A. mellifera |
GB10118-PA |
| A. aegypti |
AAEL001503 |
| H. sapiens |
ENSP00000363202 |
| B. mori |
BGIBMGA011832-TA |
| B. mori |
BGIBMGA011831-TA |
| M. musculus |
ENSMUSG00000014786 |
| D. plexippus |
DPOGS213550PA |
| T. castaneum |
TC003796 |
| H. sapiens |
ENSP00000445520 |
| P. humanus |
PHUM467900-PA |
| H. sapiens |
ENSP00000299798 |
| H. sapiens |
ENSP00000264938 |
| H. sapiens |
ENSP00000263980 |
| M. musculus |
ENSMUSG00000028854 |
| H. sapiens |
ENSP00000422983 |
| S. invicta |
SI2.2.0_10800 |