MidgeBase gene description page [Pn.14083]
Outline
| Gene ID | Pn.14083 |
| Type | Protein coding gene |
| Scaffold | PnScaf22416 |
| Start | 1336 |
| End | 3159 |
| Direction | + |
Sequence
Transcript: 846 (bp)
ATGAGAACTCTGTCTATACTGCTGTCGCTGACGGTCATTACCGTTTGCTCAGCCTACCAAATTGGTCTTGGCCGAGCAGACGTCACAGGACCGAGTGTCGAAATAGCTTTTATGGGTTATGCGCAGCTTAGCCAGCGCGGTCACGGTATTCACACGCGCCTTTATGCGCGCACATTCATCGTCGAGGACGAGCGACAGAATCGGGTAGTGTATGTCAGTGTCGACGCTGGCATGATCAGTCATGTTATCAAGCGAAATGTTATTCGCGAACTACAGAAGAAATTCGGCGCTACCTACCGATTTGACAATGTAATGATATCGGGAACTCACTCACACAGCGGACCAGCCGGCTTTCACATGTTTGTCTTGTACGATCTCACAGCAATGGGTTTCATTCCAGAGACATTCAACGCTTTCGTAAAGGGTATCACGCAATCGATCATCAACGCACACAATAATATGCTCGAGGGCCGAATTTTTCTCTCCGAAACGGAAGTCTTCGATGCAAACATAAATCGCTCGCCGCTTGCCTACGATAACAACCCTGAGGAGGAGAAGGCACAATACAAGTACAATGTAGACAAAAAGCTTGTGCAGATCCGCTTCATGGATAAACATAACAGACAAGTTCTTGGCGCCTTCAACTGGTTTGCCGTTCATCCCACATCCATGAACAACACCAACAAGTTCATCTCGTCTGACAACGTCGGTTACGCATCGCTCATGCTTGAGCGTGAGTATAATGTCGACAGTATGCCCGGTAAGGGCGCCTTTGTTGGTGCATTTTGCTCAGCTAACCTCGGGGACGTTTCCCCCAATATCAATGGCCCTAAATGTCTAGTGAGT
Protein: 282 (aa)
MRTLSILLSLTVITVCSAYQIGLGRADVTGPSVEIAFMGYAQLSQRGHGIHTRLYARTFIVEDERQNRVVYVSVDAGMISHVIKRNVIRELQKKFGATYRFDNVMISGTHSHSGPAGFHMFVLYDLTAMGFIPETFNAFVKGITQSIINAHNNMLEGRIFLSETEVFDANINRSPLAYDNNPEEEKAQYKYNVDKKLVQIRFMDKHNRQVLGAFNWFAVHPTSMNNTNKFISSDNVGYASLMLEREYNVDSMPGKGAFVGAFCSANLGDVSPNINGPKCLVS
| Type | Start | End | Length |
| CDS |
1336 |
1446 |
111 |
| CDS |
1559 |
1775 |
217 |
| CDS |
2639 |
3156 |
518 |
| intron |
1447 |
1558 |
112 |
| intron |
1776 |
2638 |
863 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_309165 |
AGAP000973-PA [Anopheles gambiae str. PEST] gb|EAA04917.3| AGAP000973-PA [Anopheles gambiae str. PEST] |
1e-105 |
| InterPro |
IPR006823 |
Neutral/alkaline nonlysosomal ceramidase |
|
| Pfam |
PF01251.13 |
Ribosomal protein S7e |
0.038 |
| Pfam |
PF04734.8 |
Neutral/alkaline non-lysosomal ceramidase |
1.8e-115 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL009273-PA |
| P. humanus |
PHUM506580-PA |
| H. melpomene |
HMEL006296-PA |
| A. gambiae |
AGAP003730 |
| M. musculus |
ENSMUSG00000024887 |
| D. melanogaster |
FBgn0039774 |
| H. sapiens |
ENSP00000329886 |
| D. plexippus |
DPOGS202788PA |
| C. quinquefasciatus |
CPIJ017133 |
| D. plexippus |
DPOGS202789PA |
| S. invicta |
SI2.2.0_00080 |
| S. invicta |
SI2.2.0_00811 |
| H. sapiens |
ENSP00000392766 |
| H. sapiens |
ENSP00000399947 |
| T. castaneum |
TC011170 |
| H. sapiens |
ENSP00000392320 |
| D. plexippus |
DPOGS202787PA |
| B. mori |
BGIBMGA010465-TA |
| H. sapiens |
ENSP00000378897 |
| S. invicta |
SI2.2.0_05070 |
| P. humanus |
PHUM445580-PA |
| N. vitripennis |
NV12533-PA |
| T. castaneum |
TC011169 |
| H. sapiens |
ENSP00000388206 |
| C. quinquefasciatus |
CPIJ005539 |
| A. gambiae |
AGAP000973 |
| B. mori |
BGIBMGA010466-TA |
| A. aegypti |
AAEL007030 |
| P. vanderplanki |
Pv.11368 |
| A. aegypti |
AAEL007028 |
| A. mellifera |
GB12800-PA |