MidgeBase gene description page [Pn.14002]
Outline
| Gene ID | Pn.14002 |
| Type | Protein coding gene |
| Scaffold | PnScaf22037 |
| Start | 17444 |
| End | 20826 |
| Direction | + |
Sequence
Transcript: 2982 (bp)
ATGGAAAGTACACCAGAGTGCAGAATATGTAGAACTGAAGCAACTGCAGATCGACCTTTATTCTTTCCTTGCATTTGCACCGGCAGCATTAAGTATATTCATCAGGAGTGCTTACTGCAATGGATGCGATACAGCAGAAAAGAGATATGCGAACTGTGCGGTCATCGATTTAACTTTACTCCAATTTATTCGCCTGATATGCCTCGAGTCCTGCCGCTCCGAGTCGTCGCCGGTGGCTTGCTCAGCTCCATTGCGACCGCCGTCAAGTACTGGCTTCACTACACGCTTGTCGCTGTCGCATGGCTCGGTATTGTTCCTCTCACTGCTTACCGCACATATCGGTTCTTCTTTTCCGGATCGCTGGATATGCTTGTATCGCTTCCCTTCGACATGCTTTCTACGGAAAATCTCGCTGCCGATGTGTTTCGAGGCTGCTTTGTCGTAACCTGCACATTGTTTGCCTTCATCGGTTTGGTTTGGCTTAGAGAACAGATTCTCCACGGAGGCGGTCCAGATTGGCTAGAGCGCGATGAAGGAAATAATGTGAATGAAGATATTCCTCGAGCGGCACCGCCGCCGCAGGCTGACAATCTGCAAGAGCCTCTGGACGACGATGAGAACGGAAATAACAATGACGAAATGTTTAACAACAACAATAACAATAATGTCCTTGATGCCAACATTCACGGATTTCAGCCGCAGCAACAGCAGCCGATTCCAAATGAGCTCAACGAGCCCATGATTGGCCCACAAATGCCGCCAGTACCGCCGGCGGCACCTCCCGCTCCACAAAATTTTGAAATACCGCAACACAATCCAATCAACAATGCAGAACCGCCGCTCCCGGACAATGACGAAGATCGCAACGAGCCGGCTGATAATGTAAATAATGACGATGGAAACGAAGGCATCTGGAATCCAATGGAATTCAATAATGGCGCAGATTTGGAGCTGACATGGGAGCGCTTGTTAGGCCTCGACGGTTCAATGGTTTTCCTCGAGCACGTGTTCTGGGTCGTCTCCTTAGATACGCTTTTTATCTTCATTTTTGCTTTCTTGCCCTACACAATTGGCAAGTTTGCAATATCGTTCTTGGGCATAAAACAGCTTCACTTTCACGGTCTAGTTACGACGTTGGCTGGATATTGCTTGGTAGGCGTTGCGCTAGTAAATTTACACGCATTCGCAAAACTATTGAAGCTGAGACGACCAAGAAGAATTCTCGGACTATGCTACATCGTCGTAAAAGTCTCGCTCCTTTCGGTCGTCGAAATCGGAGTGCTGCCACTGATTTGCGGATGGTGGCTGGACATTTGCAGTCTACCAATGTTTGATGCCACGCTCAAGGATCGCAAGGCGAGCTTCAAATCAGCTCCGGGAACATCGCTCTTCATTCACTGGATGTTCGGAATGGTTTACGTGTATTATTTTGCGTCCTTTATTGTTCTCTTACGAGAAGTATTGCGACCAGGCGTCCTATGGTTCCTCCGAAATCTCAACGATCCCGACTTCTCGCCGATACAGGAAATGATTCACCTCTCGATTCTGCGTCATATTCGACGACTGATTGCATCAGCAATAATATTCGGTTCGGCGGTGCTGCTGATGTTGTGGCTTCCGATCAAGATTTTAAAAGTCGCCTTTCCGACATTCTTACCGTATACACTATCAGGAGATTCCGAAGTAAACGAACTAAGTCTTCAGTTGCTTCTATTGCAAATTATTCTTCCCGGTTTCTTCGAGCAATCGCAGACACGCATATGGCTGAAAGGATTAATAAGGATTTGGTGCAGTGTCGTGTCATGGATATTGGGAATTAAGAGTTATTTGCTTGGAAATGAGCCGAGAAATGTGGAACAAGAGGAGAGACCTCCTGCGGATCAAGGTTTAGGTGGCGGCGGATTGGGTGCTGCACATCAAGCGCTTTTACAACGAGACGTGCCCGTCGGTTTCCAGCCCTACGATCGTCCATCCTTCTTCGCCATACGACTTATTGGATTGCTCATTTTCATGTGCATCAGTTTGGTCATTGGATCGCTGCTAACGCTGACCATTCCAGTGTGGATTGGCCGCCATGCTATGACAATTTGGTCAGTGAGCACAGGAATCGCAGCTGGAAAAGTGGTGAACGTTGAGGCCGTTGCCGCAGGAATCGACAGGGGATTGGTGAATAGTGCAAACTTGGAAGATATTAGTGGAGCAGAAAATGAGACTGTCACGTCGACTGTGTCGACATCAAAACCTCATGAACTTTACACCGCGGCGATTGGCATTTACTTGTGCTGGTTGCTGTCGAAAGGAATCGCGTTGGCGGTCAATCTGTTTCCTCAAGGACGGACAGCAATAATCGAGAAATTCAAGCATTGGTGTTCGGTGGCGATAAGTTATGGACTTGCAGCAATAATTTTTGTTCTGATGCTCGGTTTGGTGCCGCTGATGTTTGGCTTGCTGCTCGAGTTGGTCGTGGTGGTGCCGCTCAGAGTTCCACTAAACAAAACGCCAGTGCTTTTCCTCTGGCAAGACTGGGCTCTCGGTGTGCTCTACACCAAAATTACGGTTGCACTCTTGTTCATGGGCCCCGATTTTAGGCTGAAACGCGCCATCGAGCAGGCCTACCGCGACGGCTTGAGAGAAATGGATTTGAAATTTATCATAAGAGAACTTGCAATACCTGTGATTTCAGCCTTCGGCTTAGCGCTTGCGGTTCCATATGTCATCGCACATTCAATAATGCCAATATTCTTCACAAATCAACTGACTCGTGTCTTAATCGCTCGACGAATCTATCCATTCTTCCTTATTGTCATCATCGTGTGTGCAATTATCGTTTTTCAAATTAAACAATTCAAAAAGCTGTATATTGCCATCAAAAATGATAAATATTTGGTTGGAAAACGTCTCGTTAATTACGATCATCAACGACAAAAATTGCTGAATCAACAGCAGCAGCAGGCTGATGCCGCTGCTGCGCGAGCCGAACTG
Protein: 994 (aa)
MESTPECRICRTEATADRPLFFPCICTGSIKYIHQECLLQWMRYSRKEICELCGHRFNFTPIYSPDMPRVLPLRVVAGGLLSSIATAVKYWLHYTLVAVAWLGIVPLTAYRTYRFFFSGSLDMLVSLPFDMLSTENLAADVFRGCFVVTCTLFAFIGLVWLREQILHGGGPDWLERDEGNNVNEDIPRAAPPPQADNLQEPLDDDENGNNNDEMFNNNNNNNVLDANIHGFQPQQQQPIPNELNEPMIGPQMPPVPPAAPPAPQNFEIPQHNPINNAEPPLPDNDEDRNEPADNVNNDDGNEGIWNPMEFNNGADLELTWERLLGLDGSMVFLEHVFWVVSLDTLFIFIFAFLPYTIGKFAISFLGIKQLHFHGLVTTLAGYCLVGVALVNLHAFAKLLKLRRPRRILGLCYIVVKVSLLSVVEIGVLPLICGWWLDICSLPMFDATLKDRKASFKSAPGTSLFIHWMFGMVYVYYFASFIVLLREVLRPGVLWFLRNLNDPDFSPIQEMIHLSILRHIRRLIASAIIFGSAVLLMLWLPIKILKVAFPTFLPYTLSGDSEVNELSLQLLLLQIILPGFFEQSQTRIWLKGLIRIWCSVVSWILGIKSYLLGNEPRNVEQEERPPADQGLGGGGLGAAHQALLQRDVPVGFQPYDRPSFFAIRLIGLLIFMCISLVIGSLLTLTIPVWIGRHAMTIWSVSTGIAAGKVVNVEAVAAGIDRGLVNSANLEDISGAENETVTSTVSTSKPHELYTAAIGIYLCWLLSKGIALAVNLFPQGRTAIIEKFKHWCSVAISYGLAAIIFVLMLGLVPLMFGLLLELVVVVPLRVPLNKTPVLFLWQDWALGVLYTKITVALLFMGPDFRLKRAIEQAYRDGLREMDLKFIIRELAIPVISAFGLALAVPYVIAHSIMPIFFTNQLTRVLIARRIYPFFLIVIIVCAIIVFQIKQFKKLYIAIKNDKYLVGKRLVNYDHQRQKLLNQQQQQADAAAARAEL
| Type | Start | End | Length |
| CDS |
17444 |
17492 |
49 |
| CDS |
17608 |
17702 |
95 |
| CDS |
17787 |
17937 |
151 |
| CDS |
17996 |
18192 |
197 |
| CDS |
18261 |
19292 |
1032 |
| CDS |
19366 |
20823 |
1458 |
| intron |
17493 |
17607 |
115 |
| intron |
17703 |
17786 |
84 |
| intron |
17938 |
17995 |
58 |
| intron |
18193 |
18260 |
68 |
| intron |
19293 |
19365 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EGI59664 |
E3 ubiquitin-protein ligase MARCH6 [Acromyrmex echinatior] |
0.0 |
| InterPro |
IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
|
| InterPro |
IPR011016 |
Zinc finger, RING-CH-type |
|
| Gene Ontology(MF) |
GO:0008270 |
zinc ion binding |
|
| Pfam |
PF12906.2 |
RING-variant domain |
2.3e-14 |
| Pfam |
PF13923.1 |
Zinc finger, C3HC4 type (RING finger) |
0.17 |
| Pfam |
PF13639.1 |
Ring finger domain |
0.031 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC006591 |
| A. aegypti |
AAEL014578 |
| A. gambiae |
AGAP007204 |
| M. musculus |
ENSMUSG00000039100 |
| P. humanus |
PHUM521140-PA |
| D. plexippus |
DPOGS207313PA |
| N. vitripennis |
NV11979-PA |
| D. melanogaster |
FBgn0035333 |
| B. mori |
BGIBMGA012096-TA |
| H. sapiens |
ENSP00000414643 |
| P. vanderplanki |
Pv.00405 |
| H. sapiens |
ENSP00000424512 |
| A. aegypti |
AAEL009353 |
| H. melpomene |
HMEL012317-PA |
| S. invicta |
SI2.2.0_13491 |
| B. mori |
BGIBMGA012095-TA |
| H. sapiens |
ENSP00000425930 |
| H. sapiens |
ENSP00000274140 |
| C. quinquefasciatus |
CPIJ003711 |
| A. mellifera |
GB15058-PA |