MidgeBase gene description page [Pn.14001]
Outline
| Gene ID | Pn.14001 |
| Type | Protein coding gene |
| Scaffold | PnScaf22037 |
| Start | 16346 |
| End | 16862 |
| Direction | - |
Sequence
Transcript: 408 (bp)
ATGCTCAGAAATATCGCCAAACTAAACATCACCAAATCCATCTTCGCTTCAGCTCAAAGAAACGTTTCAACATCGTCGAGGCTGTTTGATATTTTCAAAATTCAAGATGAAAAAGATTTCGAGCAGCGAGTTCTTAAGTCCAAAAATGTCGTAATAGTTGACTTCATGGCAACATGGTGTGGACCGTGCAAGATGCTTGGGCCCAGGATAGAGAAGGTCATAGAGGAGAACAAGGGAAAAGTATCGCTCGCAAAAGTTGATATTGATGAATTGACTGATCTCTCGCTGGAGTATGGAGTGCAAGCTGTTCCTGTGCTTGCGGTCGTGAAAGACGGAAAGGTCCAGAACCAGATAGTAGGCCTGCAGGACATTGATGTCCTTAGAAAGTGGGTAAAGAGCAATATTGAG
Protein: 136 (aa)
MLRNIAKLNITKSIFASAQRNVSTSSRLFDIFKIQDEKDFEQRVLKSKNVVIVDFMATWCGPCKMLGPRIEKVIEENKGKVSLAKVDIDELTDLSLEYGVQAVPVLAVVKDGKVQNQIVGLQDIDVLRKWVKSNIE
| Type | Start | End | Length |
| CDS |
16349 |
16501 |
153 |
| CDS |
16608 |
16862 |
255 |
| intron |
16502 |
16607 |
106 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_308583 |
AGAP007201-PA [Anopheles gambiae str. PEST] gb|EAA04498.2| AGAP007201-PA [Anopheles gambiae str. PEST] |
6e-35 |
| InterPro |
IPR005746 |
Thioredoxin |
|
| InterPro |
IPR013766 |
Thioredoxin domain |
|
| InterPro |
IPR012336 |
Thioredoxin-like fold |
|
| Gene Ontology(BP) |
GO:0006662 |
glycerol ether metabolic process |
|
| Gene Ontology(BP) |
GO:0045454 |
cell redox homeostasis |
|
| Gene Ontology(MF) |
GO:0015035 |
protein disulfide oxidoreductase activity |
|
| Gene Ontology(MF) |
GO:0009055 |
electron carrier activity |
|
| Pfam |
PF13192.1 |
Thioredoxin domain |
8.6e-06 |
| Pfam |
PF13905.1 |
Thioredoxin-like |
4.7e-06 |
| Pfam |
PF05768.9 |
Glutaredoxin-like domain (DUF836) |
0.00052 |
| Pfam |
PF13848.1 |
Thioredoxin-like domain |
0.027 |
| Pfam |
PF13899.1 |
Thioredoxin-like |
5.7e-05 |
| Pfam |
PF09673.5 |
Type-F conjugative transfer system pilin assembly protein |
0.042 |
| Pfam |
PF08534.5 |
Redoxin |
0.00056 |
| Pfam |
PF00578.16 |
AhpC/TSA family |
0.0018 |
| Pfam |
PF13098.1 |
Thioredoxin-like domain |
2.1e-08 |
| Pfam |
PF00085.15 |
Thioredoxin |
1.2e-28 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS207298PA |
| N. vitripennis |
NV13899-PA |
| M. musculus |
ENSMUSG00000005354 |
| P. vanderplanki |
Pv.00404 |
| A. mellifera |
GB17503-PA |
| H. sapiens |
ENSP00000216185 |
| A. aegypti |
AAEL009351 |
| D. melanogaster |
FBgn0035334 |
| D. melanogaster |
FBgn0034472 |
| H. melpomene |
HMEL002181-PA |
| S. invicta |
SI2.2.0_09075 |
| P. humanus |
PHUM468080-PA |
| H. sapiens |
ENSP00000409407 |
| T. castaneum |
TC000058 |
| C. quinquefasciatus |
CPIJ003709 |
| H. sapiens |
ENSP00000385393 |
| A. gambiae |
AGAP007201 |
| B. mori |
BGIBMGA012029-TA |