MidgeBase gene description page [Pn.13988]
Outline
| Gene ID | Pn.13988 |
| Type | Protein coding gene |
| Scaffold | PnScaf21926 |
| Start | 8230 |
| End | 9320 |
| Direction | + |
Sequence
Transcript: 594 (bp)
ATGGGAGGCTACTACTGCTCGAGCTGTTATGCGTTTTCAGCAATTTGCGCCTTCGAGGGTCAACTGGCTAAGAAGTCGGGTGAATTGAAAGAGTTGTCTGAGCAAAACATCGTCGACTGTTCCAATCGATTCGGTAATTCAGGATGCGATGGAGGCACAATGAGTGCAAGTTACGAGTACATAAGGCGAAACCTGGGCATTGAGGATGACTTCACGTACCCTTACGATGGCGTATCCGGAACCTGTGACTACAATGCATCGCTCAATTATGCAACCGTAAGTGGCTACCGTTTCGTTAGTGGCGATGAAGAAAACCTTAAGCGAGCATTGGCTGCTATTGGTCCACTGGCTGTAGCCATCAAGGGTGATCTCGATAGTTTCTACTACTACTCAGAAGGCATCTTCGATGACCCTGACTGTGATGATGTCATTAACCATGCCGTATGTCTTATTGGTAAGCTAGAAAGCAGTAGTTGCAACTACTGGATAGTGAAAAACTCATGGTCAACTGATTGGGGAGAAGACGGCTACTTCAGACTAAAACGCGGCTCGAATCTCTGCGGAATCGCCAATCACGTCGTCTATCCAATACTT
Protein: 198 (aa)
MGGYYCSSCYAFSAICAFEGQLAKKSGELKELSEQNIVDCSNRFGNSGCDGGTMSASYEYIRRNLGIEDDFTYPYDGVSGTCDYNASLNYATVSGYRFVSGDEENLKRALAAIGPLAVAIKGDLDSFYYYSEGIFDDPDCDDVINHAVCLIGKLESSSCNYWIVKNSWSTDWGEDGYFRLKRGSNLCGIANHVVYPIL
| Type | Start | End | Length |
| CDS |
8230 |
8236 |
7 |
| CDS |
8383 |
8525 |
143 |
| CDS |
8668 |
8995 |
328 |
| CDS |
9061 |
9085 |
25 |
| CDS |
9227 |
9317 |
91 |
| intron |
8237 |
8382 |
146 |
| intron |
8526 |
8667 |
142 |
| intron |
8996 |
9060 |
65 |
| intron |
9086 |
9226 |
141 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
ABK63481 |
cathepsin S [Channa argus] |
1e-48 |
| InterPro |
IPR013128 |
Peptidase C1A, papain |
|
| InterPro |
IPR025661 |
Cysteine peptidase, asparagine active site |
|
| InterPro |
IPR000668 |
Peptidase C1A, papain C-terminal |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0008234 |
cysteine-type peptidase activity |
|
| Pfam |
PF03051.10 |
Peptidase C1-like family |
0.0035 |
| Pfam |
PF00112.18 |
Papain family cysteine protease |
4.7e-60 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes