MidgeBase gene description page [Pn.13980]
Outline
| Gene ID | Pn.13980 |
| Type | Protein coding gene |
| Scaffold | PnScaf21856 |
| Start | 1869 |
| End | 2524 |
| Direction | - |
Sequence
Transcript: 546 (bp)
ATGGCACTCAACAGCAAGCGGACGCAGACCTTCTTCAATGAATTTCTCATAACGACCACGCAATTCCTCAATCAGTTCATCACCGAGTGCGAAGACAAATTTTTTGAATTCGAGCGAAAGCTGAACAGAATCGAAAGCAACTTGGTGATCATCGAGGCTAAGCTGGCATCAGTGCCCGAAGAGAACCCGCCAGCAGAAGACACACAAGCCGTTCTACAACAACCGCCAATTCCCCCGCCAGAAGCTCCTCAACCCACCCAAACAAGCCAAAGTGCTCCTGAAACTTCTTCACAAAATCAACAGCAACAACAACAACAAATTTCGGATCCAGTTCCTGAGGAAAAAGCCGCTCAGGAGGCTTCGAATCTCATCAAAATCACCGAGTCATTCCTCTACAAAAAATTCTTCAAGATGGTGAAATTCGGCGTGCCGCCAACGGCCGTCAAAGGCAAAATGGTCTCCGAAGGCCTCGACGGAAGTCTGCTTGACAAACCCGACCTGATGGTCGAGAAGGTTCCCGAGGACGACGAGGCGGAAGAGGCTGAG
Protein: 182 (aa)
MALNSKRTQTFFNEFLITTTQFLNQFITECEDKFFEFERKLNRIESNLVIIEAKLASVPEENPPAEDTQAVLQQPPIPPPEAPQPTQTSQSAPETSSQNQQQQQQQISDPVPEEKAAQEASNLIKITESFLYKKFFKMVKFGVPPTAVKGKMVSEGLDGSLLDKPDLMVEKVPEDDEAEEAE
| Type | Start | End | Length |
| CDS |
1872 |
2255 |
384 |
| CDS |
2363 |
2524 |
162 |
| intron |
2256 |
2362 |
107 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001356592 |
GA20344 [Drosophila pseudoobscura pseudoobscura] gb|EAL33656.1| GA20344 [Drosophila pseudoobscura pseudoobscura] |
2e-24 |
| InterPro |
IPR019309 |
WASH complex, subunit CCDC53 |
|
| Pfam |
PF10374.4 |
Telomerase activating protein Est1 |
0.054 |
| Pfam |
PF05308.6 |
Mitochondrial fission regulator |
0.023 |
| Pfam |
PF05843.9 |
Suppressor of forked protein (Suf) |
0.76 |
| Pfam |
PF10152.4 |
Predicted coiled-coil domain-containing protein (DUF2360) |
4.9e-36 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. aegypti |
AAEL001775 |
| B. mori |
BGIBMGA010494-TA |
| H. sapiens |
ENSP00000443857 |
| M. musculus |
ENSMUSG00000020056 |
| P. humanus |
PHUM549390-PA |
| A. gambiae |
AGAP005049 |
| H. sapiens |
ENSP00000240079 |
| H. sapiens |
ENSP00000440134 |
| S. invicta |
SI2.2.0_15674 |
| S. invicta |
SI2.2.0_16118 |
| H. melpomene |
HMEL002687-PA |
| A. mellifera |
GB19907-PA |
| N. vitripennis |
NV11355-PA |
| C. quinquefasciatus |
CPIJ003979 |
| D. melanogaster |
FBgn0031979 |
| P. vanderplanki |
Pv.03015 |
| H. sapiens |
ENSP00000441810 |
| D. plexippus |
DPOGS202771PA |
| T. castaneum |
TC007698 |