MidgeBase gene description page [Pn.13963]
Outline
| Gene ID | Pn.13963 |
| Type | Protein coding gene |
| Scaffold | PnScaf21785 |
| Start | 32995 |
| End | 34861 |
| Direction | - |
Sequence
Transcript: 1344 (bp)
ATGGAAGGAAAAGTCGGTGAGGCCAAGTTGAGAAAGAACAAGTGCAACACATGCTTCGACTGCCCATCATGCACTTTGTCGGCTCTTTCTGCTCGAGCAACTACAATCCAAGTTCCAATGTCTACGAAGGCAAAAGATACAGAAGTCGAGGAAAGCACAGAGGCCGATGCATCCAGTGCCAAAATGGTCTCGAAAAAAATGTACTACCTCGCCTGTCTCGCATGCCGCTATTCGTCTCGCGACGTTGGAATTTCTGATCAGCCTACGCAAAACTTTTGCTGGCCTGAACAAGAGTATATGCATCAAATTCGTTTCAATACGATCCTGGATCATTATCAGTCGGTCGTTTTGCATGATAAGCAGCTAAAACAAGACGAGAAACGTCGTCGCTCGACCAAGCAATCAAAATTTCCCACCATGACTGATCGCACGGGATTGAGTGTCTCGGCAATCAGAAGACAAATGGGCTTTGATAAAACCGCAGCAAAGCCGAAGACCAAACCAGCGGCAATAACGCCGTCGTCAATCGACGAGATTGAGGATCTTCCGGATGAGATTTTCTCACAGTCAATCAATTTGAAAAACATCACGACAATTCAGCAGCGCTTCACACAGCCAGCTAATCAACCGGAGAGTGTCAAGCATCTCTATCCGCAGCACAAGAATCTCTCAATTAAGCGCTCGATTCGTTGCCGTCATTGCGAACACAACGTCATCAAACCCGAATACAATCCCACATCAATCAAGTATCGCATTCAGCAGTTTGCGAGCAGCCACGTGCCTGAAGTTCGTATCATCAAGTGCGAGCCGTTGCAACCAAACAAAAGCGCACTGATCACGTTGAAAATCACCAATCCAACTATGAATGACATGACTATCACGATTATGGATCTTCCGACCGAAGACGAAGAGAAAATGATGATTGAAGAAATGCGCAAGAATTTCGAGAGAAACCTCAGCGTCTCGAACAAGTCATCCATAATGCGTCCATCGTTGATCGAAGATCCGAGGATTGTATCGTGTAAAACGACAGCAAAACTACAACTTCCCGATAGCTCCTTCTCGATCAATCAACGTGACGACTCGGCGGAATTCGATGATGACATTCAATCGGATAAAAAAGATCCCAAATTCATCATATGGCGAAAGGCGAATAAGATCGCAATACAATTGAGTATTACACCCGACAGCGATTTGAAAGTCAATGACGACGTCAAAATCGGCTTCTCAATGAACTTTACCTACAGCACGGTTCCTTCGTCGACACCAGACAAGAAAGACAGCCAACAGCAGCATCACGCATTGAGCGCTCGCGTTTATATCACGGCCGGAAAGATTATTCCG
Protein: 448 (aa)
MEGKVGEAKLRKNKCNTCFDCPSCTLSALSARATTIQVPMSTKAKDTEVEESTEADASSAKMVSKKMYYLACLACRYSSRDVGISDQPTQNFCWPEQEYMHQIRFNTILDHYQSVVLHDKQLKQDEKRRRSTKQSKFPTMTDRTGLSVSAIRRQMGFDKTAAKPKTKPAAITPSSIDEIEDLPDEIFSQSINLKNITTIQQRFTQPANQPESVKHLYPQHKNLSIKRSIRCRHCEHNVIKPEYNPTSIKYRIQQFASSHVPEVRIIKCEPLQPNKSALITLKITNPTMNDMTITIMDLPTEDEEKMMIEEMRKNFERNLSVSNKSSIMRPSLIEDPRIVSCKTTAKLQLPDSSFSINQRDDSAEFDDDIQSDKKDPKFIIWRKANKIAIQLSITPDSDLKVNDDVKIGFSMNFTYSTVPSSTPDKKDSQQQHHALSARVYITAGKIIP
| Type | Start | End | Length |
| CDS |
32998 |
33211 |
214 |
| CDS |
33281 |
33462 |
182 |
| CDS |
33547 |
33908 |
362 |
| CDS |
33964 |
34126 |
163 |
| CDS |
34188 |
34594 |
407 |
| CDS |
34846 |
34861 |
16 |
| intron |
33212 |
33280 |
69 |
| intron |
33463 |
33546 |
84 |
| intron |
33909 |
33963 |
55 |
| intron |
34127 |
34187 |
61 |
| intron |
34595 |
34845 |
251 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650614 |
dynactin P62 subunit [Aedes aegypti] gb|EAT43296.1| dynactin P62 subunit [Aedes aegypti] |
1e-131 |
| InterPro |
IPR008603 |
Dynactin p62 |
|
| Pfam |
PF08557.5 |
Sphingolipid Delta4-desaturase (DES) |
0.024 |
| Pfam |
PF05502.8 |
Dynactin p62 family |
5.4e-33 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000416968 |
| A. aegypti |
AAEL005254 |
| H. sapiens |
ENSP00000414906 |
| A. mellifera |
GB18370-PA |
| P. vanderplanki |
Pv.12443 |
| D. melanogaster |
FBgn0033206 |
| M. musculus |
ENSMUSG00000024603 |
| P. humanus |
PHUM221160-PA |
| S. invicta |
SI2.2.0_01077 |
| A. gambiae |
AGAP000908 |
| B. mori |
BGIBMGA002379-TA |
| H. sapiens |
ENSP00000411251 |
| P. vanderplanki |
Pv.15444 |
| T. castaneum |
TC011388 |
| N. vitripennis |
NV16303-PA |
| H. melpomene |
HMEL014662-PA |
| D. plexippus |
DPOGS210246PA |