MidgeBase gene description page [Pn.13949]
Outline
| Gene ID | Pn.13949 |
| Type | Protein coding gene |
| Scaffold | PnScaf21771 |
| Start | 13234 |
| End | 17344 |
| Direction | - |
Sequence
Transcript: 2571 (bp)
ATGGAGAAGCATGACGAGGACAAGACGACCCAGACGAGCTTCATAGTGTGGGAGGCGCTGAAATCGATTATTTGCAACAACATCGATTACTACAAGAGCGACGAAACGACAAACGGCCTGAAACTGCATGGCGCCTTACTGGGAATAATTGATGAAATCGACGAGGCGCGACCTCTCTACGCCGAAATCGAGTCGTTCTGCAGCGACTACGACTTGGACGAGAACACAAAGGCAAACGGATACCGGAGCTATCTGAAAGTCTTTGACGCCGCCATCAATCACACTCTCAAAATTCTCAAGTATGTCACCGAGAATCGATCGGGTCTTTTGTTCCGCAAGACGGCGTACACAAAGGAAATCGAGGCATGCAATCACTTGTTGGGCGCTCTGATTGCATCATTTCATCAGTTGATTCATCTGCACACGACGAGCGAGGGAGGGAATTTGTTTTCCGCACGAGAGCACTCGCCCGACGAGGTGCTCGCACGTGCCCTCACCATAAATCAATTCGCCTTTTACGGCCGCTGCTTGGGCTTTCAATATTTTGATTCAATTAGGCCCGTCCTCAAGTTCATTGCCATTTCGATGGCGTGCTACTCAGAGTCCTACTACAGCAAGAGCGGAACCTTCATCAAGGCAACCAACTCGATGTTCACCAGCGGCAAGTACTACTTCGATCCCGAGCTGCGTGCACGCCGAATCGTCAATTTGTCGCAGCACGCCTCCGTCGACTTTTGCAAGAACTTTTGGTTCCTCGCCGAGATGGAGATCATGCACTCGATTCCGTTTGTGAACTTCAGCGTGAAGGTCAATCGTCTTATCAAGATCAACACGGAGCCCTTGAGGGTCGAGAAGGTGGGCGGCGAGACGATTGAAGTCAAAGGACCGGGAACGATTCAAGTGCGATTGATCAGTTCGCACAGGAGGGAGGGAATGGTCGGTGAGAAAAAGGACGGAAAATGCTCTGACCATGTGCTGCCGAAATCGCGGTCGATCATCTTGCACGCTCACGGCGGCGGTTTCGTGGCGCAGAGTTCAAAGTCGCACCTTGTGTACCTGCTCGAGTGGGCGGTGAATCTAAACGTTCCGATACTGTCGCTCGACTACTCGCTCTCGCCGGAGCATCCATACCCTCGGCCTCTCGAGGAGATGCTCTACACATACTGCTGGATTCTGAAAAACGCGGAACTTTTGGGAACAACGGCCGAGCGGATTGTCCTCTGTGGCGACTCGGCCGGTGCCAACCTGTGTCTTTCGACGCTGCTCAAGTGCATCGACATGAAGATTCGCAAGCCGGACGGCGTCTTCCTCGCCTACTGTCCGATTCTCGTGGCCTTCGATCCCTCGCCATCTCGACTCTTATGCCTTATGGATCCCTTAATTCCCTTCGGCTTCATGATTCGATGTCTGAGGGCTTTCAGCAATGGCGAGTCGGTGGCGAGCGGCGAGAACGACGCGGCCGCTGCGGCAGTAAATCTCCGGGATTTAGAGGAACTGAAGCGTGCCAAAGCCGACCGCAATGAGGAGCTAAAGCGCAAGAGCTCGCTCAACATGGAGGCGGAGCAGCCGGAGTTCAGCAGCGAGAACTCGGACCGCACCGACTCGTTCGAGGAGATTTCGTGCTTCGAACGCCACCAGACTGACTCGGACATCAAGGCGCACATCTCGCAGGCGAGCGACGTCGAGGCGAGCAACGACACGCTCGCCGGCACATCCTTCCTCACCGGCACGGACTTCAAGAACAGCCGCGATACCATCGAGGTCGTCAGCCCCATCGACAGCATCCGCTCGGCGACCTCGCTCGAGGAGGACTCGCTGCCGATCACCGTGCAGAGGAATGAGCGGCGCGCCAACAGCGAGGAGCTAGCCGACGTCGACCTGCAGCCGACCACCTCCGAGGACACGACCATCAAGAACAGCCACGGCCAGTTCGTGGACGAGTTCATCGGGAAGTACGTGCTCGGTGCGGAGCAGCATCGGGACGGGCTGATAAAGCCAGTCTTGCGGAAGGTGTCGAGGACGCGGAGCGAGGAGAACATCGTCTTCGACGTGTCGAAGGAGACGCTCAGCGTGCGGACGTTTCAGCAGAAGGTCCATCGAGTCGCATCCACGCTGGTGCACGCGTGCTCCTCGACTCTCGGACAGATCACACGAACCAATCGCCCCATCACGAAGAACTTCTCGTGCGACGATGCCGACGAGTTGCGGCTCTTGGACAGCGAGGAGGTGCCGCACTCGTCCACAAACGACTTTCTCTTCACCGTCTCGAAGGATCCGTTCATGTCGCCCTTTTACGCCGACGACGACGCTCTCCGGCAATTTCCGGCAATTAGGTTTCTTTCGCTCACGCTCGACGCCTGCTTGGATGATTCAATTACGTATGTGAAGCGACTCAAGCGCCTCAACGTTGACTACAAGCTCGACATTCTCGAGGGCCTGCCGCACGGCTTCCTCAATTTTGCTCGGATCTCGAAGGATGCACACGAGGGATCGAAGGTCGCAATGACGAGAATCGCAGAGCTGCTGAACATCACACTCGATGAGGACGAAACCAAAGTCAAATATTATTGT
Protein: 857 (aa)
MEKHDEDKTTQTSFIVWEALKSIICNNIDYYKSDETTNGLKLHGALLGIIDEIDEARPLYAEIESFCSDYDLDENTKANGYRSYLKVFDAAINHTLKILKYVTENRSGLLFRKTAYTKEIEACNHLLGALIASFHQLIHLHTTSEGGNLFSAREHSPDEVLARALTINQFAFYGRCLGFQYFDSIRPVLKFIAISMACYSESYYSKSGTFIKATNSMFTSGKYYFDPELRARRIVNLSQHASVDFCKNFWFLAEMEIMHSIPFVNFSVKVNRLIKINTEPLRVEKVGGETIEVKGPGTIQVRLISSHRREGMVGEKKDGKCSDHVLPKSRSIILHAHGGGFVAQSSKSHLVYLLEWAVNLNVPILSLDYSLSPEHPYPRPLEEMLYTYCWILKNAELLGTTAERIVLCGDSAGANLCLSTLLKCIDMKIRKPDGVFLAYCPILVAFDPSPSRLLCLMDPLIPFGFMIRCLRAFSNGESVASGENDAAAAAVNLRDLEELKRAKADRNEELKRKSSLNMEAEQPEFSSENSDRTDSFEEISCFERHQTDSDIKAHISQASDVEASNDTLAGTSFLTGTDFKNSRDTIEVVSPIDSIRSATSLEEDSLPITVQRNERRANSEELADVDLQPTTSEDTTIKNSHGQFVDEFIGKYVLGAEQHRDGLIKPVLRKVSRTRSEENIVFDVSKETLSVRTFQQKVHRVASTLVHACSSTLGQITRTNRPITKNFSCDDADELRLLDSEEVPHSSTNDFLFTVSKDPFMSPFYADDDALRQFPAIRFLSLTLDACLDDSITYVKRLKRLNVDYKLDILEGLPHGFLNFARISKDAHEGSKVAMTRIAELLNITLDEDETKVKYYC
| Type | Start | End | Length |
| CDS |
13237 |
13341 |
105 |
| CDS |
13900 |
15353 |
1454 |
| CDS |
15816 |
16086 |
271 |
| CDS |
16164 |
16551 |
388 |
| CDS |
16992 |
17344 |
353 |
| intron |
13342 |
13899 |
558 |
| intron |
15354 |
15815 |
462 |
| intron |
16087 |
16163 |
77 |
| intron |
16552 |
16991 |
440 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312370 |
AGAP002567-PA [Anopheles gambiae str. PEST] gb|EAA08041.5| AGAP002567-PA [Anopheles gambiae str. PEST] |
0.0 |
| InterPro |
IPR010468 |
Hormone-sensitive lipase, N-terminal |
|
| InterPro |
IPR013094 |
Alpha/beta hydrolase fold-3 |
|
| Gene Ontology(BP) |
GO:0016042 |
lipid catabolic process |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(BP) |
GO:0008203 |
cholesterol metabolic process |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Gene Ontology(MF) |
GO:0016298 |
lipase activity |
|
| Pfam |
PF06350.7 |
Hormone-sensitive lipase (HSL) N-terminus |
2.5e-103 |
| Pfam |
PF10340.4 |
Protein of unknown function (DUF2424) |
6.1e-11 |
| Pfam |
PF07859.8 |
alpha/beta hydrolase fold |
3.5e-36 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13933 |
| Pn.13506 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05611 |
| D. melanogaster |
FBgn0034491 |
| T. castaneum |
TC008216 |
| M. musculus |
ENSMUSG00000003123 |
| N. vitripennis |
NV12945-PA |
| A. aegypti |
AAEL005706 |
| S. invicta |
SI2.2.0_07777 |
| A. gambiae |
AGAP002567 |
| P. vanderplanki |
Pv.16772 |
| H. sapiens |
ENSP00000244289 |
| C. quinquefasciatus |
CPIJ015981 |
| A. mellifera |
GB17559-PA |
| P. humanus |
PHUM288260-PA |
| D. plexippus |
DPOGS206593PA |