MidgeBase gene description page [Pn.13909]
Outline
| Gene ID | Pn.13909 |
| Type | Protein coding gene |
| Scaffold | PnScaf21718 |
| Start | 5124 |
| End | 6073 |
| Direction | + |
Sequence
Transcript: 519 (bp)
ATGAAATATTACGAAGAAAACAGTGCTGCGATGAGTGAAGATGAAAATCTCGATGTGGAAAGCGACGAGGAGGAATCAAGTGACAATAAATCTCGCAATGCAAACAACCAATATTTCTCTCAGGCGGAGAAGCGTGCACATCATAACGCTTTAGAGCGTAAAAGACGAGATCACATAAAAGACAGTTTCACATCTTTACGTGATTCCGTCCCGTCACTGCAGGGAGAAAAGGCAAGTCGCGCACAAATATTGAAGAAAGCAGCCGAATACATACAATTCATGCGACGCAAGAATAACTCACACCAACAAGACATTGAGGATCTTAAACGACAAAACACCGTGCTCGAAGCTCAAATTCGCTCACTTGAAAGGGCCAGACAAACCGGAAACTTTGGTGGAGCTGATGGAGGTGATGAAGTTTCTATGCAGAATGTAAAATCAGAAAACAGCTCACATGAAAGCTCAGACGAGAATGACGATAACGAACGAAGAAACAAGCGCTTCAAGACAACAACATAT
Protein: 173 (aa)
MKYYEENSAAMSEDENLDVESDEEESSDNKSRNANNQYFSQAEKRAHHNALERKRRDHIKDSFTSLRDSVPSLQGEKASRAQILKKAAEYIQFMRRKNNSHQQDIEDLKRQNTVLEAQIRSLERARQTGNFGGADGGDEVSMQNVKSENSSHESSDENDDNERRNKRFKTTTY
| Type | Start | End | Length |
| CDS |
5124 |
5189 |
66 |
| CDS |
5290 |
5346 |
57 |
| CDS |
5466 |
5513 |
48 |
| CDS |
5576 |
5635 |
60 |
| CDS |
5711 |
5834 |
124 |
| CDS |
5907 |
6070 |
164 |
| intron |
5190 |
5289 |
100 |
| intron |
5347 |
5465 |
119 |
| intron |
5514 |
5575 |
62 |
| intron |
5636 |
5710 |
75 |
| intron |
5835 |
5906 |
72 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001601193 |
PREDICTED: protein max-like [Nasonia vitripennis] |
7e-48 |
| InterPro |
IPR011598 |
Helix-loop-helix DNA-binding |
|
| Pfam |
PF12700.2 |
HlyD family secretion protein |
3 |
| Pfam |
PF08614.6 |
Autophagy protein 16 (ATG16) |
2.2 |
| Pfam |
PF10186.4 |
UV radiation resistance protein and autophagy-related subunit 14 |
3.4 |
| Pfam |
PF04582.7 |
Reovirus sigma C capsid protein |
0.077 |
| Pfam |
PF00010.21 |
Helix-loop-helix DNA-binding domain |
5.3e-18 |
| Pfam |
PF04156.9 |
IncA protein |
1.2 |
| Pfam |
PF04977.10 |
Septum formation initiator |
0.53 |
| Pfam |
PF02183.13 |
Homeobox associated leucine zipper |
0.1 |
| Pfam |
PF07716.10 |
Basic region leucine zipper |
0.031 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000378104 |
| A. aegypti |
AAEL012237 |
| H. sapiens |
ENSP00000450818 |
| H. sapiens |
ENSP00000451907 |
| H. sapiens |
ENSP00000351175 |
| H. sapiens |
ENSP00000452286 |
| H. sapiens |
ENSP00000452197 |
| D. melanogaster |
FBgn0017578 |
| H. sapiens |
ENSP00000452378 |
| N. vitripennis |
NV15216-PA |
| B. mori |
BGIBMGA004944-TA |
| A. gambiae |
AGAP003177 |
| M. musculus |
ENSMUSG00000059436 |
| H. sapiens |
ENSP00000284165 |
| D. plexippus |
DPOGS202288PA |
| H. sapiens |
ENSP00000452405 |
| T. castaneum |
TC009976 |
| A. mellifera |
GB13176-PA |
| H. sapiens |
ENSP00000351490 |
| S. invicta |
SI2.2.0_08029 |
| P. humanus |
PHUM220200-PA |
| C. quinquefasciatus |
CPIJ003297 |
| P. vanderplanki |
Pv.13042 |
| H. melpomene |
HMEL003993-PA |