MidgeBase gene description page [Pn.13846]
Outline
| Gene ID | Pn.13846 |
| Type | Protein coding gene |
| Scaffold | PnScaf21406 |
| Start | 308 |
| End | 1229 |
| Direction | + |
Sequence
Transcript: 696 (bp)
ATGGGCGGCGATGAAGTGAGCGTCGGATGCTGGAACACGAGCGACTCAATAAAGCAGTGGATGAGCGAGAAAAACATGCCTTTGACTGTCGGCGGCTTTATGAGACTTTGGGATTACTTTCAAGCGAGTGCTTTGGCCAGATTGGATGCCGTCAGTGACCGAAAGCTGCCGATAATTCTGTGGACAAGCACTCTCACCGAGGAGCCTTATTTGAGCGAGTTCATCGACAAAAATCGCTACATCATCCAGATTTGGCTGGACGGAAAGGACAGAAAGATAAAAGAGCTTCTTGAGCTCGGTTACAAGCTCATTCTGTCGAACTCTGACGCGCTCTATCTCGACTGCGGCGTCGGCGGATGGGTGAACGAGGGCCTCAACTGGTGCTCGCCGTACCGAACTTGGCAGAAAATCTACGAGAACCGCATGGAGGCGATTGCGGGCAACTATGTCGATCAAATCCTCGGAGCCGAGGCGACCATCTGGTCAGAATCGATTGACGAAGATGTCATCGACATGCGGATTTGGCCACGAGCGTCTGCACTCGCCGAACGACTGTGGTCCAATCCCAGCACACCGTGGGCGGCTGCCGAGGCGAGACTGCTGATGAACCGAAAGCGAATGGTGGAGATCGGAGGACTCGCGGCGGAACCTCTTCAACTCGAGTGGTGCGTTCAGAACGAAGCTGAATGTCCTCAG
Protein: 232 (aa)
MGGDEVSVGCWNTSDSIKQWMSEKNMPLTVGGFMRLWDYFQASALARLDAVSDRKLPIILWTSTLTEEPYLSEFIDKNRYIIQIWLDGKDRKIKELLELGYKLILSNSDALYLDCGVGGWVNEGLNWCSPYRTWQKIYENRMEAIAGNYVDQILGAEATIWSESIDEDVIDMRIWPRASALAERLWSNPSTPWAAAEARLLMNRKRMVEIGGLAAEPLQLEWCVQNEAECPQ
| Type | Start | End | Length |
| CDS |
308 |
704 |
397 |
| CDS |
865 |
1029 |
165 |
| CDS |
1093 |
1226 |
134 |
| intron |
705 |
864 |
160 |
| intron |
1030 |
1092 |
63 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002074367 |
GK10559 [Drosophila willistoni] gb|EDW85353.1| GK10559 [Drosophila willistoni] |
3e-80 |
| InterPro |
IPR015883 |
Glycoside hydrolase family 20, catalytic core |
|
| InterPro |
IPR025705 |
Beta-hexosaminidase subunit alpha/beta |
|
| InterPro |
IPR017853 |
Glycoside hydrolase, superfamily |
|
| InterPro |
IPR013781 |
Glycoside hydrolase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0005975 |
carbohydrate metabolic process |
|
| Gene Ontology(MF) |
GO:0043169 |
cation binding |
|
| Gene Ontology(MF) |
GO:0004553 |
hydrolase activity, hydrolyzing O-glycosyl compounds |
|
| Gene Ontology(MF) |
GO:0004563 |
beta-N-acetylhexosaminidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00728.17 |
Glycosyl hydrolase family 20, catalytic domain |
1.3e-32 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes