MidgeBase gene description page [Pn.13841]
Outline
| Gene ID | Pn.13841 |
| Type | Protein coding gene |
| Scaffold | PnScaf21355 |
| Start | 87 |
| End | 891 |
| Direction | + |
Sequence
Transcript: 582 (bp)
ATGCTCTTCAACGACTGGAATGCAGGCTATGAGAAGCTCACCGACATGATCGTTCCTCGCTCATCCCAACTCATTACACAGGACCAGGATTTCGGCTTGTTCAACGTAACGCTCTTCAAGAAGGTCGTTGATGAATTCAAGTTGCATGCACGCGAGAAGAAATTCGTTGTGCGCGACTTCACATACAACGAGGAGGAGTTGGCGGCTGGAAAGAATGAAATCACCAAATTGGTGACGGATAAGAAGAAGCAATTTGGTCCACTCGTCCGATGGCTCAAAGTAAACTTTAGTGAATGTTTCTGTGCATGGATTCACGTAAAGGCCCTTCGTGTTTTTGTCGAATCGGTGCTGAGATATGGATTACCCGTAAACTTCCAAGCCATCCTCATCCATCCGAACAAAAAGAATCAAAAGCGTCTGCGCGATGTACTGAATCAATTATACGGCCACCTCGATGGCTCCGCATCATCTTCATCAAATAACGCTGACAATGTTGATATTCCCGGCTTGGGCTTCGGTCAGTCAGAGTACTATCCGTATGTATTTTATAAATTGAACGTCGACATGGTGGAGTCAAAGATT
Protein: 194 (aa)
MLFNDWNAGYEKLTDMIVPRSSQLITQDQDFGLFNVTLFKKVVDEFKLHAREKKFVVRDFTYNEEELAAGKNEITKLVTDKKKQFGPLVRWLKVNFSECFCAWIHVKALRVFVESVLRYGLPVNFQAILIHPNKKNQKRLRDVLNQLYGHLDGSASSSSNNADNVDIPGLGFGQSEYYPYVFYKLNVDMVESKI
| Type | Start | End | Length |
| CDS |
87 |
341 |
255 |
| CDS |
401 |
498 |
98 |
| CDS |
573 |
708 |
136 |
| CDS |
796 |
888 |
93 |
| intron |
342 |
400 |
59 |
| intron |
499 |
572 |
74 |
| intron |
709 |
795 |
87 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001843335 |
vacuolar ATP synthase subunit C [Culex quinquefasciatus] gb|EDS32198.1| vacuolar ATP synthase subunit C [Culex quinquefasciatus] |
1e-101 |
| InterPro |
IPR004907 |
ATPase, V1 complex, subunit C |
|
| Gene Ontology(BP) |
GO:0015991 |
ATP hydrolysis coupled proton transport |
|
| Gene Ontology(CC) |
GO:0033180 |
proton-transporting V-type ATPase, V1 domain |
|
| Gene Ontology(MF) |
GO:0016820 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances |
|
| Pfam |
PF03223.10 |
V-ATPase subunit C |
5.4e-93 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS215153PA |
| S. invicta |
SI2.2.0_11571 |
| P. vanderplanki |
Pv.08392 |
| C. quinquefasciatus |
CPIJ002067 |
| T. castaneum |
TC009631 |
| M. musculus |
ENSMUSG00000022295 |
| A. aegypti |
AAEL015594 |
| H. sapiens |
ENSP00000428204 |
| P. humanus |
PHUM039540-PA |
| A. aegypti |
AAEL005173 |
| H. sapiens |
ENSP00000430282 |
| A. gambiae |
AGAP005845 |
| A. mellifera |
GB11380-PA |
| B. mori |
BGIBMGA013964-TA |
| H. sapiens |
ENSP00000379203 |
| D. melanogaster |
FBgn0262511 |
| H. melpomene |
HMEL017374-PA |
| H. sapiens |
ENSP00000430129 |