MidgeBase gene description page [Pn.13817]
Outline
| Gene ID | Pn.13817 |
| Type | Protein coding gene |
| Scaffold | PnScaf21174 |
| Start | 9202 |
| End | 10354 |
| Direction | - |
Sequence
Transcript: 546 (bp)
ATGATTAAGCTCTTTTCTTTAAAACAACAGAAAAAGGAAGGCGAAGGTGGTGGACAACAGAAATCCACAAGATCTGCTGCTCAGCTGCGAATCACAAAAGACATCAACGAGCTAAACCTTCCGCGAACATGTACCACTTCATTCCCTGATCCAAATGACTTGCTTAATTTTAAAATGATTATATGCCCAGATGAAGGATATTATAGAAATGGTCGGTTCGTTTTTAATTTTAAAGTCGGTCCAAATTATCCACACGAGCCACCGAAAGTGAAATGCGAGACTAAGGTCTACCATCCAAATATTGATTTGGAAGGCAATGTATGTTTAAACATTTTACGTGAAGATTGGAAGCCAGTTCTAACGATAAACTCTATAGTTTATGGATTACAATATCTTTTCCTTGAACCGAATGCTGAAGATCCCCTCAACAAAGAGGCTGCAGACGTTTTGCAAAATAATCGTCGTCTCTTCGAGCACAATGTGGCAAAAGCAATGCGAGGATCCTATATTGGAGACGTTTACTTTGATCGTTGTCTCATCACAAAC
Protein: 182 (aa)
MIKLFSLKQQKKEGEGGGQQKSTRSAAQLRITKDINELNLPRTCTTSFPDPNDLLNFKMIICPDEGYYRNGRFVFNFKVGPNYPHEPPKVKCETKVYHPNIDLEGNVCLNILREDWKPVLTINSIVYGLQYLFLEPNAEDPLNKEAADVLQNNRRLFEHNVAKAMRGSYIGDVYFDRCLITN
| Type | Start | End | Length |
| CDS |
9205 |
9348 |
144 |
| CDS |
9668 |
9756 |
89 |
| CDS |
9824 |
9902 |
79 |
| CDS |
9961 |
10094 |
134 |
| CDS |
10255 |
10354 |
100 |
| intron |
9349 |
9667 |
319 |
| intron |
9757 |
9823 |
67 |
| intron |
9903 |
9960 |
58 |
| intron |
10095 |
10254 |
160 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001849033 |
ubiquitin-conjugating enzyme m [Culex quinquefasciatus] gb|EDS29543.1| ubiquitin-conjugating enzyme m [Culex quinquefasciatus] |
3e-87 |
| InterPro |
IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
|
| InterPro |
IPR000608 |
Ubiquitin-conjugating enzyme, E2 |
|
| InterPro |
IPR023313 |
Ubiquitin-conjugating enzyme, active site |
|
| Gene Ontology(MF) |
GO:0016881 |
acid-amino acid ligase activity |
|
| Pfam |
PF05773.17 |
RWD domain |
0.013 |
| Pfam |
PF00179.21 |
Ubiquitin-conjugating enzyme |
2.6e-38 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000005575 |
| A. gambiae |
AGAP005916 |
| P. vanderplanki |
Pv.12919 |
| D. melanogaster |
FBgn0035853 |
| A. mellifera |
GB13168-PA |
| S. invicta |
SI2.2.0_02930 |
| T. castaneum |
TC003234 |
| N. vitripennis |
NV17219-PA |
| H. sapiens |
ENSP00000253023 |
| D. plexippus |
DPOGS213102PA |
| H. melpomene |
HMEL006555-PA |
| B. mori |
BGIBMGA007862-TA |
| P. humanus |
PHUM581720-PA |
| A. aegypti |
AAEL009026 |
| C. quinquefasciatus |
CPIJ007408 |