MidgeBase gene description page [Pn.13685]
Outline
| Gene ID | Pn.13685 |
| Type | Protein coding gene |
| Scaffold | PnScaf20694 |
| Start | 11028 |
| End | 17109 |
| Direction | + |
Sequence
Transcript: 1281 (bp)
ATGTCAAGCTTATCGCCCATTCATCACTCGTCGTCGTCGCCGAGCAGCTCAAATTCAAATGAGGAGCACGATCATGCCACTCCGCCGCCACTCACAATGCCGCCGGAAATTCGAATTTTCCAACAGCAAGAAAATGGCAGCGCCGAAAAGGGACTGAACAACTACAACAATAATCATCATCATCACCATCACCACCACGACCTCCATCAGACGCCGACGCTCAGCAATAAAAAGTCGTTTTGCATCGATGCTTTGCTGGCGAAAAGTAAGAGCGACGAGCAGAATGGTGACGATGATAAGACGCATAATCAGTATGTAAATAACAATAATTATAAGGATCATGTGATTTCGAGAGATCTCAACAACAGCCCCGATGACGACATGTCGAGATCGGACTCACCAATCTCGTCGACGCGATCAAGCCCGCCAATAAGCCCGGGATGCGAGGATCAGAACCTGTCGGAGAGCTACATGCCCGATGACTCATTTAAGCGTCCGATTCCGCCCGAGATGAGACAGCAAGCGTTCCCTCCACAATTCTACAACATGTACCAGCCGCAATTATTGCTCCCCAACAGCTCAGCATTCCACCGACCCGATGCTAATGGAAAATCATCGATACCTATACCCGGCTTCGTTCCCCATCTGTCAAATCTCGAATTGATACGACAGGCAGGCATTTTTTATCCGCGAATCACCGATCTAACGGGCCAACACGGGTTATTCGGAAAGACTCGTCGTCCACGCACTGCATTTACGTCGCAACAACTCTTGGAGCTCGAAAAGCAGTTTAAGCAAAATAAATATTTGTCACGACCGAAACGCTATGAAGTCGCAAGCAACCTTCTACTGACAGAGACTCAGGTCAAAATCTGGTTTCAGAACAGAAGAATGAAATGGAAGCGATCGAGGAAGGCACAACAGGAGTCAAAGAGCAAGTCGAGTTCAAGCAATAGCGACGAAAAGAGTTCGCATGACAGATCTTCTTCTTCTTCGTCATCATCATCGTCGTCGTCATCTAGCTCATCTGTGCCGCAAATTCCAACGTCCGCTCCGAGAAACGCTCTCAACGAGAAAGTCATGACAAATCTGACGAATGGCAGTTTTCATTTTCCCAAAAATATCGATCCTCATCTCAGCCAGCACACAGTTTTGCCGCAACATCAAAGAATAGCGCTTTCGAACAAAGAGGTTCTGGTTAATGACGAGAGCAGTTATCTTATAAATCGAGTGCAACCGAGCGTCTTCAACGAAGGAGACGATATGATTTGGAGAGTAGTT
Protein: 427 (aa)
MSSLSPIHHSSSSPSSSNSNEEHDHATPPPLTMPPEIRIFQQQENGSAEKGLNNYNNNHHHHHHHHDLHQTPTLSNKKSFCIDALLAKSKSDEQNGDDDKTHNQYVNNNNYKDHVISRDLNNSPDDDMSRSDSPISSTRSSPPISPGCEDQNLSESYMPDDSFKRPIPPEMRQQAFPPQFYNMYQPQLLLPNSSAFHRPDANGKSSIPIPGFVPHLSNLELIRQAGIFYPRITDLTGQHGLFGKTRRPRTAFTSQQLLELEKQFKQNKYLSRPKRYEVASNLLLTETQVKIWFQNRRMKWKRSRKAQQESKSKSSSSNSDEKSSHDRSSSSSSSSSSSSSSSSVPQIPTSAPRNALNEKVMTNLTNGSFHFPKNIDPHLSQHTVLPQHQRIALSNKEVLVNDESSYLINRVQPSVFNEGDDMIWRVV
| Type | Start | End | Length |
| CDS |
11028 |
11416 |
389 |
| CDS |
11472 |
11706 |
235 |
| CDS |
11789 |
11873 |
85 |
| CDS |
16013 |
16062 |
50 |
| CDS |
16141 |
16245 |
105 |
| CDS |
16620 |
16631 |
12 |
| CDS |
16702 |
17106 |
405 |
| intron |
11417 |
11471 |
55 |
| intron |
11707 |
11788 |
82 |
| intron |
11874 |
16012 |
4139 |
| intron |
16063 |
16140 |
78 |
| intron |
16246 |
16619 |
374 |
| intron |
16632 |
16701 |
70 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_648164 |
extra-extra [Drosophila melanogaster] gb|AAF50503.1| extra-extra [Drosophila melanogaster] gb|AAL89903.1| RE39081p [Drosophila melanogaster] |
5e-59 |
| InterPro |
IPR020479 |
Homeodomain, metazoa |
|
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF12782.2 |
Invertebrate innate immunity transcript family |
5.2 |
| Pfam |
PF08880.6 |
QLQ |
0.16 |
| Pfam |
PF07218.6 |
Rhoptry-associated protein 1 (RAP-1) |
0.32 |
| Pfam |
PF09726.4 |
Transmembrane protein |
2.5 |
| Pfam |
PF00046.24 |
Homeobox domain |
2.4e-22 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| T. castaneum |
TC009461 |
| A. gambiae |
AGAP005041 |
| D. melanogaster |
FBgn0041156 |
| A. mellifera |
GB11098-PA |
| S. invicta |
SI2.2.0_03084 |
| H. sapiens |
ENSP00000438552 |
| P. vanderplanki |
Pv.04420 |
| A. aegypti |
AAEL012474 |
| P. humanus |
PHUM035300-PA |