MidgeBase gene description page [Pn.13684]
Outline
| Gene ID | Pn.13684 |
| Type | Protein coding gene |
| Scaffold | PnScaf20694 |
| Start | 8520 |
| End | 9684 |
| Direction | + |
Sequence
Transcript: 747 (bp)
ATGAAGGGAGAAGATTTAAGTGACATTCCCGAAAATGTAATTTATCGAAAAACTTTCGATAATAATAATCAAAAGGCAATTAAGAGCTCGTTTTTGATCGAATCGCTGTTATCAAATAATAGCGGTAATGCGCCAAAAAATAATTCGCCCGAGCGAGACAGAGATCAGTGTGAAAGTGATTCAAATTCGTGCAATTCGTCGATATGCTCGAGTCCTTCGATTAGTCCAGGATGTGAGAATGCTGAGAGCCCTACAAATGGACTGCACAATGTTCCACACATGCCAATGACCGCACATCCCCTCATGAGCTTCCCGCACCACTACCCGAACCTTGAAATGTTCTACCATCCGCGACAGTTTTACTACGAAAACTACGACTTTAACCGACACCCCGGATTGTTCGGAAAGACTCGAAGACCCCGCACAGCATTCACTTCGCAGCAGCTTTTGGAGCTCGAGAAGCAGTTTAAACAAAATAAATATTTGTCACGGCCAAAACGCTATGAAGTCGCAAGCTCGCTGCTACTGACAGAGACTCAGGTTAAAATCTGGTTCCAAAACAGAAGAATGAAGTTCAAGCGGTCACGGCGAGTGCAGAAAGAGTCGAGCAAAGACAGTAAAAGTTCGAGCAGTCAAAAATCACAAGAAGATCTCAAATCATCCTCATCAGCGACCTCAAAAAATGATCTCAAATCCCTCCATCATCACCCTCATCCCTCCTTCAATTCCTACGTCTCTGGACTTGCA
Protein: 249 (aa)
MKGEDLSDIPENVIYRKTFDNNNQKAIKSSFLIESLLSNNSGNAPKNNSPERDRDQCESDSNSCNSSICSSPSISPGCENAESPTNGLHNVPHMPMTAHPLMSFPHHYPNLEMFYHPRQFYYENYDFNRHPGLFGKTRRPRTAFTSQQLLELEKQFKQNKYLSRPKRYEVASSLLLTETQVKIWFQNRRMKFKRSRRVQKESSKDSKSSSSQKSQEDLKSSSSATSKNDLKSLHHHPHPSFNSYVSGLA
| Type | Start | End | Length |
| CDS |
8520 |
8695 |
176 |
| CDS |
8754 |
8962 |
209 |
| CDS |
9035 |
9084 |
50 |
| CDS |
9149 |
9253 |
105 |
| CDS |
9396 |
9407 |
12 |
| CDS |
9487 |
9681 |
195 |
| intron |
8696 |
8753 |
58 |
| intron |
8963 |
9034 |
72 |
| intron |
9085 |
9148 |
64 |
| intron |
9254 |
9395 |
142 |
| intron |
9408 |
9486 |
79 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001971391 |
GG14457 [Drosophila erecta] gb|EDV50417.1| GG14457 [Drosophila erecta] |
1e-31 |
| InterPro |
IPR020479 |
Homeodomain, metazoa |
|
| InterPro |
IPR017970 |
Homeobox, conserved site |
|
| InterPro |
IPR001356 |
Homeodomain |
|
| InterPro |
IPR009057 |
Homeodomain-like |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Gene Ontology(MF) |
GO:0043565 |
sequence-specific DNA binding |
|
| Gene Ontology(MF) |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
| Pfam |
PF08880.6 |
QLQ |
0.014 |
| Pfam |
PF00046.24 |
Homeobox domain |
4e-22 |
| Pfam |
PF12440.3 |
Melanoma associated antigen family N terminal |
0.52 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04419 |