MidgeBase gene description page [Pn.13683]
Outline
| Gene ID | Pn.13683 |
| Type | Protein coding gene |
| Scaffold | PnScaf20689 |
| Start | 56768 |
| End | 58398 |
| Direction | - |
Sequence
Transcript: 1188 (bp)
ATGGCATTAAGATGCTTGGGTGTATTGATTCGTAAGGAGCTGTCTGGTGAAATGACGCGCAGACTCAGCACCACTGCAGCACGCAACAATTTCCTTCGCGAGTCACCAAATGCACATCTCAACAAATTGCTGCTGAATCGCTACACAGGACTGAAATACGATCAACAGAAAAATGTTCAGGCAACTTATGTGTGGATCGACGGCACTGGTGAGAACGTCCGCTTGAAGGATCGTGTGCTGAAAAGTATCCCCGAGAGACCCGAGGACTGTCCAAACTGGCAATATGACGGCAGCTCAACATATCAAGCATTGGGCGAAAACTCTGACATAACACTCGTGCCGCGTGCTCTTTACAAGGACCCCTTCAAGGCTGGCGCAAACGATGTCATCGTTCTGTGCGACACATACAAGCCTGACGGCAGTCCCTGTGACTCAAATCATCGTGCAGCAATGCAAGCCGCTTACGACAAGACAAAGGATCTCGAACCGTGGTTCGGTATTGAGCAGGAATACACATTCTTGGACGTTGACAAACGCCCACTCGGTTGGCCAGCAAATGGATTTCCCGGTCCGCAAGGTCCATACTATTGTGCAGCTGGCGCAGAGAAAGTAGTCGGACGCGATATTGTCGAAGCCCACGCGCTCGCATGCATTTATTCTGGAGTCGAGTTTGCAGGCACAAATGCCGAAGTCATGCCAGCTCAATGGGAGTATCAAGTTGGTCCGTCGCTTGGCATGAAAGCCGCCGATGACCTCTGGATTTCTCGATACATTCTGTGGCGCATTGCGGAAGAGTTTGGCGTCGTTGTTACGTTCGATCCAAAGCCGATGGAAGGAAACTGGAACGGCGCGGGTGGACACACAAACTTCTCGACAAAGCCGATGCGTGAAGACGGCGGCATTTGTGCGATTGAGCAAGCAATCGAGAAGCTTTCGAAGCAACACTCGAAGCACATTAAAGCCTACGATCCACGAGGAGGTAAGGATAACGAAAGACGTCTAGTTGGACGCTTGGAGACGTCATCGATTGACAAGTTCTCGTGGGGTGTTGCCGATCGCAGTTGCAGCGTCCGTATTCCAAGAGGAGTTGCCAACGCAAAGAAAGGTTACCTTGAGGACCGACGCCCTTCGAGCAACATGGATCCCTACAGTGTCTGCAATGCAATTCTCACTACATGTTTGGTGGAC
Protein: 396 (aa)
MALRCLGVLIRKELSGEMTRRLSTTAARNNFLRESPNAHLNKLLLNRYTGLKYDQQKNVQATYVWIDGTGENVRLKDRVLKSIPERPEDCPNWQYDGSSTYQALGENSDITLVPRALYKDPFKAGANDVIVLCDTYKPDGSPCDSNHRAAMQAAYDKTKDLEPWFGIEQEYTFLDVDKRPLGWPANGFPGPQGPYYCAAGAEKVVGRDIVEAHALACIYSGVEFAGTNAEVMPAQWEYQVGPSLGMKAADDLWISRYILWRIAEEFGVVVTFDPKPMEGNWNGAGGHTNFSTKPMREDGGICAIEQAIEKLSKQHSKHIKAYDPRGGKDNERRLVGRLETSSIDKFSWGVADRSCSVRIPRGVANAKKGYLEDRRPSSNMDPYSVCNAILTTCLVD
| Type | Start | End | Length |
| CDS |
56771 |
57105 |
335 |
| CDS |
57168 |
57195 |
28 |
| CDS |
57284 |
57564 |
281 |
| CDS |
57650 |
57686 |
37 |
| CDS |
57784 |
58110 |
327 |
| CDS |
58219 |
58398 |
180 |
| intron |
57106 |
57167 |
62 |
| intron |
57196 |
57283 |
88 |
| intron |
57565 |
57649 |
85 |
| intron |
57687 |
57783 |
97 |
| intron |
58111 |
58218 |
108 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR23937 |
hypothetical protein AND_11821 [Anopheles darlingi] |
0.0 |
| InterPro |
IPR008146 |
Glutamine synthetase, catalytic domain |
|
| InterPro |
IPR008147 |
Glutamine synthetase, beta-Grasp |
|
| InterPro |
IPR014746 |
Glutamine synthetase/guanido kinase, catalytic domain |
|
| Gene Ontology(BP) |
GO:0006807 |
nitrogen compound metabolic process |
|
| Gene Ontology(BP) |
GO:0006542 |
glutamine biosynthetic process |
|
| Gene Ontology(MF) |
GO:0004356 |
glutamate-ammonia ligase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF03951.14 |
Glutamine synthetase, beta-Grasp domain |
7.5e-17 |
| Pfam |
PF00120.19 |
Glutamine synthetase, catalytic domain |
1.2e-62 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP008988 |
| C. quinquefasciatus |
CPIJ003744 |
| P. vanderplanki |
Pv.02558 |
| A. aegypti |
AAEL013458 |
| M. musculus |
ENSMUSG00000026473 |
| H. sapiens |
ENSP00000356537 |
| H. melpomene |
HMEL017041-PA |
| B. mori |
BGIBMGA004280-TA |
| D. plexippus |
DPOGS209638PA |
| N. vitripennis |
NV11493-PA |
| P. humanus |
PHUM009660-PA |
| P. vanderplanki |
Pv.08777 |
| C. quinquefasciatus |
CPIJ010973 |
| B. mori |
BGIBMGA000680-TA |
| H. melpomene |
HMEL012223-PA |
| P. humanus |
PHUM467880-PA |
| H. sapiens |
ENSP00000344958 |
| D. plexippus |
DPOGS200911PA |
| A. aegypti |
AAEL001887 |
| P. humanus |
PHUM130940-PA |
| H. sapiens |
ENSP00000398320 |
| B. mori |
BGIBMGA006703-TA |
| H. sapiens |
ENSP00000307900 |
| A. gambiae |
AGAP002355 |
| T. castaneum |
TC002601 |
| D. melanogaster |
FBgn0001142 |
| D. melanogaster |
FBgn0001145 |
| A. mellifera |
GB10139-PA |