MidgeBase gene description page [Pn.13656]
Outline
| Gene ID | Pn.13656 |
| Type | Protein coding gene |
| Scaffold | PnScaf20629 |
| Start | 17373 |
| End | 20361 |
| Direction | - |
Sequence
Transcript: 930 (bp)
ATGATCACCATGAACATGATGAGCCGAATCTACGAGGCATGGCGCGATCTAATGGACAACAAATCGGATCCGCGAACGCGAAATTGGTTCATGATGGACAGCCCGCTACCGACGATCGCCATCAGCGCAGCATACATTTTTACAGTGAAGGTAATCGGTCCACAGATCATGAAGAACCGAAAGCCATACAACGCGAAGAGGCTGCAGCTCTACTACAATCTCTTTCACCTCGTCATCAACATTTTTCTCTTCTATGAGGCGTGCAGCGGATGGCTCGTGAACTACTCGTTTCGCTGCCAGCCGGTTGACTTCAGCATGGACGGTGCGCCATATCGAATTGCACGAGGCTGCTGGCTTTATTACATGAGCAAATTTACCGATTTCTTCGAGACCTGCATATTTGTCTTGCTCAAACGCTTCGACATGATCAACCTTTATCACGTTGCGCATCACAGCATTATGCCGGTCTCCGTTTGGTGGGGTGTGAAATTTCTGGCCGGAGGTCACTCAACCTTCTTCGGATTCCTCAACACTTTTGTGCACATTGTGATTTACACTTACCTGGTGATCATCGCTCTCTTTCCAAAGACAAAGACATCCCTTTTCTTCTGGTGGAAGCCCTTCTATCCTTACTTCCAGATCGCACAGTTCTCGTTGATCTTCATTCATGCATTCCAGCTGATATTCAGCAATGAGTGCAATTACCCGATGAGCTTTGTCTATTTCATAGGAGGACATGCGGTTCTTTTCTACTTCTTGGTCAAAAGCAAAATGCGGACTGACAAGCTGAAGCTCGAGGAATCGTTGAAGAAGGAAAAGCTCTGCAGTGACACTCATGAGAGTAATGGGAAACTCAAGCTAATTGAGATGACAATCAAATCGACACACGACGGGACAAGACACAGGAGTGCTCAGATTGAGCCATCTCGA
Protein: 310 (aa)
MITMNMMSRIYEAWRDLMDNKSDPRTRNWFMMDSPLPTIAISAAYIFTVKVIGPQIMKNRKPYNAKRLQLYYNLFHLVINIFLFYEACSGWLVNYSFRCQPVDFSMDGAPYRIARGCWLYYMSKFTDFFETCIFVLLKRFDMINLYHVAHHSIMPVSVWWGVKFLAGGHSTFFGFLNTFVHIVIYTYLVIIALFPKTKTSLFFWWKPFYPYFQIAQFSLIFIHAFQLIFSNECNYPMSFVYFIGGHAVLFYFLVKSKMRTDKLKLEESLKKEKLCSDTHESNGKLKLIEMTIKSTHDGTRHRSAQIEPSR
| Type | Start | End | Length |
| CDS |
17376 |
17531 |
156 |
| CDS |
17628 |
17762 |
135 |
| CDS |
17833 |
17969 |
137 |
| CDS |
18032 |
18068 |
37 |
| CDS |
18129 |
18257 |
129 |
| CDS |
18350 |
18535 |
186 |
| CDS |
18774 |
18917 |
144 |
| CDS |
20356 |
20361 |
6 |
| intron |
17532 |
17627 |
96 |
| intron |
17763 |
17832 |
70 |
| intron |
17970 |
18031 |
62 |
| intron |
18069 |
18128 |
60 |
| intron |
18258 |
18349 |
92 |
| intron |
18536 |
18773 |
238 |
| intron |
18918 |
20355 |
1438 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_313358 |
AGAP003600-PA [Anopheles gambiae str. PEST] gb|EAA08894.4| AGAP003600-PA [Anopheles gambiae str. PEST] |
8e-84 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
3.5e-37 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04407 |