MidgeBase gene description page [Pn.13612]
Outline
| Gene ID | Pn.13612 |
| Type | Protein coding gene |
| Scaffold | PnScaf20435 |
| Start | 16176 |
| End | 31298 |
| Direction | + |
Sequence
Transcript: 2649 (bp)
ATGATGAATAATGAGAGTGATAAAAGCGATTACGATGCAACGAGTGACTATAATCTTAGGCAAGAAGCGGGAGAAATTGAAATCTATCGGCGATACTTGAGCACCCTCGATTATGCTAATCCGAAGAACCTCAACGGAAGTGCAATTTTTCGCGATTATGCAAAGCTCCTTTTCACCGTGAACTCGTCCTTTGACGATGCCAATGAGAGCCTGAGCGGCGACGAGATTTTTCCCCGCACCGTCTCGTACAATTACTTTGCTCGCTCGACGGCCGTGCTGACAATACTGACGGTGATCTATTTGGGGATTTTCGTGGCCGGCGTGCTGGGCAATGTCGTGACCTGCATTGTCATCGCGAAAAACAAGTCGATGCACACTGCAGTCAACTACTATCTGTTCAGTCTCGCCATATCGGACTTGTGCTTGCTCATAACTGCGCTGCCCGACGAAGTGTACATGCTGTGGAATCAGGAGTATCCGTTCAACGAGAATGTTTGTAAATTTCACAAGTTTGCCGCTGAGAGCTTTACGAATGCGACTGTTTTTACCATAACTGCATTCACCATTGAGAGATATGTTGCCATTTGTAAGCCTTTTCTATCGCACACATTATCAAAGCTCTCTCGAGCGTACAAGTTCATTCTCTTCATATGGGTGATATCAGTTTGCTTGGCAGTGCCCCAGACTCTGTTCACTCTGCATCTCGACGAAACCTTTCGAATATGCATTCCAAAGGCCGAACATGTGCACTTTTTTGTTGTCTCAACATTTCTCCTCTTTGTGATACCAATGTCAATAATAACAATTCTCTACATATTAATTGGCCTGCAATTGCGTAAATCGAAAATAGTTCAACGTGGTGCTGTCAACGGAAGCAGTGTGCGCTTAAAGCGGAAAATATTTAAGAACCCCGCCAAGCACCAAACGTTAGTGACAGTAAATTGCGAGTCCCACTACAATGAGGCACTCATACATCAGCAGCAGCAGCAGCAGCAGCAGTTACAGCACCAACATCGAGCAGGCGACATTAATAAGAACTTTAAGGCTAATAATTTGATAGAGCAAGAAAACTCAATTCCCGAGGATGGACGCATAAACTACTCGAACAACCGAGCGCAGGTTCACCACGGATCGAGACACGTTGTTAATATGCTGGAGCACGTTGATTGCCGTCCAACACCCGCAGAAGAGAATCTCACTAAGGAAACACGAAACCAAAGAGAAAAAAAGCCACAGCACGTCCTCACCAAGGCCAGATTCTCGAAATACATAATCGAATGCGTGCTCCTCCTCGCTAACCTATGCACACATCCAACATTTTTCATTTCTTTATCTTCTCTTCCAGTTGTTGTAGTTATCGCATTTTTCATCTGTTGGCTGCCTTTCCACATCCAGCGACTGCTATTTTCATACATTGATCCCGGCGTACTGACAGATAATGAATCATTCGTAGTGAATAGCGTATCCGGGGTTTTATTCTTCGTATCGACGTGCATAAATCCCTTTCTCTACAACATCATGTCGAACAAATTTCGAGAAGCCTTCAAGGTGACAATTGCAAAGTACATCTATTCGACGCATCTCGAGAAGTGTCCCTCGTCGGGCGGAAAAGGGCTTTTTCGCACGATTTCCCAGCGTTCTTATTCAATGAACTCGACCTCATTAAACACATGCTCATCTGTATGCTCGATGCAGCCTTTCAGCGCGCAGAACCCTCAGCAACTCACATTCCGGTACTTTGATTCGAAACGTCCACTCGTCGTGTCGTTCCGGCGGGTGAACAAAATGACACAGAATAACTTTACGCTCGAGCACTGCGGCTCGATGAATGACTTTCACCGTGTCGGCATCGGAACGGGATGTGGCGGCACTTCGGGCGCTGCCGGAAGCAGCTACGGCCTCAACGCAATTAAGTGTGGAAAAGATAATGGCGGGCACAAGTATGGCAATCGAAACGGCATCATGCGATCATACGAGAATCAATCGTGTAGAAATTTCAATTATTTCGATAAGAGCAGGGCGCACTTCGAGGTTCAATACGACGACGATGAGGACGACTACGACGAAGACGACGGCACGTATCGAAATGATAGAATTACCATCACATATCCGAAGGAGAAATTCTATGGAAATGCGAAGCTCCTGTTCACGCCGAGAAATGCCATCAATGAGAATGTCAACCAACTTTATGAGGAAATTCTGCGAAAGCAGTCCATTGCACAGCACGATGACGGCATTTTTGTGTCAAATGGCCAAAACCACAACAACAACAACGGTGCGGGTCAGTTCGCAAAAAATAAGCCGGCCAAGAGGCACACGAATAAATCCTTCCTCATCAACGCCAACTCCCAGACGAACCTCAGCGAGTTCAACGGCACGCGCAGGAATTTTCTTCACTCGAAATTCGCGAAAATGTTCAACTCGCCAAACGACGTTCACTTCGAAACGCGCGTCAACTTTCCGCGGCGAAAATGCGCATCGATACCGTCGCTATACAAAATATCTCATTTTCCCAATACACTCGATATGAATTTTAAACAAGCTACTGCTGCGAGAGATGACAGCGATATTGGCAAGAAAAGTTGCGTCTCCGCTTTAAATGTGGGCGGAACAAAGGAAACTTTTCAAGTTAGGACCTCAAAGAGCTGT
Protein: 883 (aa)
MMNNESDKSDYDATSDYNLRQEAGEIEIYRRYLSTLDYANPKNLNGSAIFRDYAKLLFTVNSSFDDANESLSGDEIFPRTVSYNYFARSTAVLTILTVIYLGIFVAGVLGNVVTCIVIAKNKSMHTAVNYYLFSLAISDLCLLITALPDEVYMLWNQEYPFNENVCKFHKFAAESFTNATVFTITAFTIERYVAICKPFLSHTLSKLSRAYKFILFIWVISVCLAVPQTLFTLHLDETFRICIPKAEHVHFFVVSTFLLFVIPMSIITILYILIGLQLRKSKIVQRGAVNGSSVRLKRKIFKNPAKHQTLVTVNCESHYNEALIHQQQQQQQQLQHQHRAGDINKNFKANNLIEQENSIPEDGRINYSNNRAQVHHGSRHVVNMLEHVDCRPTPAEENLTKETRNQREKKPQHVLTKARFSKYIIECVLLLANLCTHPTFFISLSSLPVVVVIAFFICWLPFHIQRLLFSYIDPGVLTDNESFVVNSVSGVLFFVSTCINPFLYNIMSNKFREAFKVTIAKYIYSTHLEKCPSSGGKGLFRTISQRSYSMNSTSLNTCSSVCSMQPFSAQNPQQLTFRYFDSKRPLVVSFRRVNKMTQNNFTLEHCGSMNDFHRVGIGTGCGGTSGAAGSSYGLNAIKCGKDNGGHKYGNRNGIMRSYENQSCRNFNYFDKSRAHFEVQYDDDEDDYDEDDGTYRNDRITITYPKEKFYGNAKLLFTPRNAINENVNQLYEEILRKQSIAQHDDGIFVSNGQNHNNNNGAGQFAKNKPAKRHTNKSFLINANSQTNLSEFNGTRRNFLHSKFAKMFNSPNDVHFETRVNFPRRKCASIPSLYKISHFPNTLDMNFKQATAARDDSDIGKKSCVSALNVGGTKETFQVRTSKSC
| Type | Start | End | Length |
| CDS |
16176 |
16611 |
436 |
| CDS |
21843 |
21978 |
136 |
| CDS |
24586 |
24658 |
73 |
| CDS |
25131 |
25169 |
39 |
| CDS |
25240 |
25446 |
207 |
| CDS |
27378 |
27642 |
265 |
| CDS |
29035 |
29152 |
118 |
| CDS |
29299 |
29572 |
274 |
| CDS |
30195 |
31295 |
1101 |
| intron |
16612 |
21842 |
5231 |
| intron |
21979 |
24585 |
2607 |
| intron |
24659 |
25130 |
472 |
| intron |
25170 |
25239 |
70 |
| intron |
25447 |
27377 |
1931 |
| intron |
27643 |
29034 |
1392 |
| intron |
29153 |
29298 |
146 |
| intron |
29573 |
30194 |
622 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EEZ97729 |
hypothetical protein TcasGA2_TC011320 [Tribolium castaneum] |
2e-59 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF10320.4 |
Serpentine type 7TM GPCR chemoreceptor Srsx |
6.4e-07 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
2.9e-46 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.11167 |