MidgeBase gene description page [Pn.13600]
Outline
| Gene ID | Pn.13600 |
| Type | Protein coding gene |
| Scaffold | PnScaf20417 |
| Start | 15681 |
| End | 19475 |
| Direction | - |
Sequence
Transcript: 2235 (bp)
ATGGCAGCCACGAGAAAACTACAAGGTGAAATTGATCGTTGTCTAAAGAAAGTAACGGAAGGCGTAGAGACATTCGAGGACATTTGGCAGAAAGTGCATAATGCCACCAACAGTAATCAAAAGGAAAAGTATGAAACCGACCTCAAAAAGGAAATCAAGAAGCTACAGAGGCTTCGAGATCAAATCAAATCATGGATTGCGTCGGGAGAAATTAAGGATAAGACATCGCTCTTAGATAATCGACGACTTATAGAGACGCAAATGGAGAGATTCAAAGTGGTCGAGAGGGAAACGAAAACGAAGGCATACTCAAAAGAAGGTCTTGGAGCGGCACAAAAGCTTGATCCAGCACAGCGAGAGAAAGAGTCTGTTAGTTGTTGGCTTCAAAATTCCATTAGTTCCCTACAAATACAAACTGATCAGTACGAGAGCGAAATTGAGTCGTTGCTTGCGAACAAAAAGAAGCGTCTCGATAAGGAGAAGCAGGACAAGATGGACGATCTAAAGTCAAAACTCGAGCGACACAAGTTTCACATAACAAAGCTCGAAACACTGCTGAGGATGCTCGATAACGATAGCGTCGATGTGGAGCAGATAAGGAAAATTCGTGACGACGTGGAATACTATATCGATTCATCACAAGAACCTGATTTTGAGGAGAACGAGTTCATCTATGACGACATTGAGGGTCTCGACGAAGTGGAATTGAGTGGTTTACCATCAGTAGCGGGGACGACTGAGAGTAACAACAGCAATGAAACGGGAGAATCGCCGACCAGCACAGCGTCGACTAGTCCTATCAATTCACCTGCACTCAACTGCAGCGCGCCAACAACGGCAAATGCGACCAGCAAACATAATCATAGTGGGTCAACATCTGTGGACTATACTGACTTGAAGAAGAATAAAGTGTCTGAAAATTCCATCTCAAAGCCCTTAAAGCCAACTGCTGTAAGACCGAAAATTGAAAATAACAACACTTCACTACCGGCATCAACATCGCTCAACAACAATAACAACAACAGTAATAGTACGTCCACTGCTTCCGCTGCCTCGCATAATACTAAGCCATTGATAACGCCTAGTAAGAATCAACCGTCAGCTGCCCAAATCTTGGCGAATAATACAAACAACAATAGCATACAATCACCGTCAACTATATTACCTACGCCGCCTATCGCATTTGCAGCAGTTGCAAAGCAAAATCCAGACATTTTACAACATACGTCGGGCGTGCACAGTAACAATACTAGTAATGTGATGTCAAATAATAATAATAATGCGACAATTGAGAATCATTTGAACAACAACAGCAGTTCACTGAGCAATTGTGTCTCGCCAACGAGTAATCAGTCCGCAGCAATAAGCAGCAGCAGTCGAACATCACCGACGAGTCTCATGTCACCGCAACAGCAGCAGCAGCAACAACAACAACAACAGCAAGTTCTCAATGGACCTTCACAGAAGCAAGTGACAACATCTCAGCAACAGCAACAGCAGCAGCAGGCGCCACAGCAGCCGCAGCCCAATGCTGTCTCTCATTCAACTGATCCATCCAGTGAGTCGATGTCAACGCTAAAGACAATTGCACAAGAAGTTGTGAATAGAACGAATGTGAATTTAGTAACACCGCCGATTATGACGCAAAATCTTCAGCTTCAACAACAGCAGCAGCAGCAACAACAACAGCAGCAACAACAACAACAACAACAATCTTATGTCATGGATACGTCGTCAATTGATCCATCGTCTACTGCCAATATCAATAGTTTGATAAATGCGACAAACGCATCAAGCTCGACTAAAACTGCTGGAACGAATGAAGCTTTAATTCCGCCTCTCCTCGGCGTCGCCCCGCTCGGCCCGTCACCGCTTCAAAAAGATCATCAACAACAATTTCAAATGATGGAAGCAGCTTACTATCATCTCCCATCGCCGAGTGATTCTGAGCGTCTGCGGCCATATTTGCAAAGGCAGCCGGTTCAAACTCCACCACATTTTCCACAAACTCAACTTCCACATTCGGATACAATAGATTTCTTTCAACGTCTCGCAACGGAAACTCTGTTCTTTGTGTTCTACTACATGGAAGGGACTAAGGCTCAATATCTAGCAGCGAAGGCTCTCAAGAAACAAAGCTGGAGATTTCATACAAAATACATGATGTGGTTTCAACGTCACGAGGAACCCAAGATTATCAATGAAGAATATGAGCAGGCAAGTCGATTGTTATGC
Protein: 745 (aa)
MAATRKLQGEIDRCLKKVTEGVETFEDIWQKVHNATNSNQKEKYETDLKKEIKKLQRLRDQIKSWIASGEIKDKTSLLDNRRLIETQMERFKVVERETKTKAYSKEGLGAAQKLDPAQREKESVSCWLQNSISSLQIQTDQYESEIESLLANKKKRLDKEKQDKMDDLKSKLERHKFHITKLETLLRMLDNDSVDVEQIRKIRDDVEYYIDSSQEPDFEENEFIYDDIEGLDEVELSGLPSVAGTTESNNSNETGESPTSTASTSPINSPALNCSAPTTANATSKHNHSGSTSVDYTDLKKNKVSENSISKPLKPTAVRPKIENNNTSLPASTSLNNNNNNSNSTSTASAASHNTKPLITPSKNQPSAAQILANNTNNNSIQSPSTILPTPPIAFAAVAKQNPDILQHTSGVHSNNTSNVMSNNNNNATIENHLNNNSSSLSNCVSPTSNQSAAISSSSRTSPTSLMSPQQQQQQQQQQQQVLNGPSQKQVTTSQQQQQQQQAPQQPQPNAVSHSTDPSSESMSTLKTIAQEVVNRTNVNLVTPPIMTQNLQLQQQQQQQQQQQQQQQQQQSYVMDTSSIDPSSTANINSLINATNASSSTKTAGTNEALIPPLLGVAPLGPSPLQKDHQQQFQMMEAAYYHLPSPSDSERLRPYLQRQPVQTPPHFPQTQLPHSDTIDFFQRLATETLFFVFYYMEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKIINEEYEQASRLLC
| Type | Start | End | Length |
| CDS |
15684 |
15911 |
228 |
| CDS |
15976 |
16086 |
111 |
| CDS |
16183 |
16868 |
686 |
| CDS |
17462 |
17738 |
277 |
| CDS |
17845 |
18065 |
221 |
| CDS |
18142 |
18595 |
454 |
| CDS |
18673 |
18807 |
135 |
| CDS |
18934 |
19031 |
98 |
| CDS |
19451 |
19475 |
25 |
| intron |
15912 |
15975 |
64 |
| intron |
16087 |
16182 |
96 |
| intron |
16869 |
17461 |
593 |
| intron |
17739 |
17844 |
106 |
| intron |
18066 |
18141 |
76 |
| intron |
18596 |
18672 |
77 |
| intron |
18808 |
18933 |
126 |
| intron |
19032 |
19450 |
419 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_610176 |
lethal (2) NC136 [Drosophila melanogaster] gb|AAL39573.1| LD13864p [Drosophila melanogaster] gb|AAF57324.2| lethal (2) NC136 [Drosophila melanogaster] gb|ACL84307.1| l(2)NC136-PA [synthetic construct] gb|ACQ66051.1| MIP07457p [Drosophila melanogaster] |
0.0 |
| InterPro |
IPR007282 |
NOT2/NOT3/NOT5 |
|
| InterPro |
IPR012270 |
CCR4-NOT complex, subunit 3/ 5 |
|
| InterPro |
IPR007207 |
Not CCR4-Not complex component, N-terminal |
|
| Gene Ontology(BP) |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Pfam |
PF04065.10 |
Not1 N-terminal domain, CCR4-Not complex component |
1.2e-93 |
| Pfam |
PF04153.13 |
NOT2 / NOT3 / NOT5 family |
8.5e-30 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000461859 |
| H. sapiens |
ENSP00000459993 |
| H. sapiens |
ENSP00000458399 |
| H. sapiens |
ENSP00000398463 |
| H. sapiens |
ENSP00000221232 |
| H. sapiens |
ENSP00000461878 |
| H. sapiens |
ENSP00000460287 |
| D. plexippus |
DPOGS200865PA |
| H. sapiens |
ENSP00000458150 |
| H. sapiens |
ENSP00000461735 |
| S. invicta |
SI2.2.0_80465 |
| H. sapiens |
ENSP00000460641 |
| H. sapiens |
ENSP00000460106 |
| H. sapiens |
ENSP00000460807 |
| H. sapiens |
ENSP00000460485 |
| H. sapiens |
ENSP00000459204 |
| T. castaneum |
TC002501 |
| P. vanderplanki |
Pv.04647 |
| N. vitripennis |
NV13753-PA |
| H. sapiens |
ENSP00000351159 |
| H. sapiens |
ENSP00000460231 |
| H. sapiens |
ENSP00000461888 |
| H. sapiens |
ENSP00000458473 |
| H. sapiens |
ENSP00000459984 |
| H. sapiens |
ENSP00000459027 |
| A. gambiae |
AGAP009030 |
| H. sapiens |
ENSP00000460393 |
| H. sapiens |
ENSP00000460961 |
| A. aegypti |
AAEL012930 |
| H. sapiens |
ENSP00000461021 |
| H. sapiens |
ENSP00000461475 |
| P. humanus |
PHUM023270-PA |
| C. quinquefasciatus |
CPIJ010111 |
| H. sapiens |
ENSP00000461711 |
| H. sapiens |
ENSP00000458908 |
| H. sapiens |
ENSP00000383954 |
| H. sapiens |
ENSP00000459394 |
| D. melanogaster |
FBgn0033029 |
| H. sapiens |
ENSP00000461348 |
| A. mellifera |
GB13637-PA |
| H. melpomene |
HMEL012635-PA |
| H. sapiens |
ENSP00000460794 |
| H. sapiens |
ENSP00000460908 |
| H. sapiens |
ENSP00000458623 |
| H. sapiens |
ENSP00000401703 |
| B. mori |
BGIBMGA009854-TA |
| H. sapiens |
ENSP00000459413 |
| H. sapiens |
ENSP00000461530 |
| H. sapiens |
ENSP00000461516 |
| H. sapiens |
ENSP00000460646 |
| H. sapiens |
ENSP00000459493 |
| H. sapiens |
ENSP00000461815 |
| H. sapiens |
ENSP00000459928 |
| H. sapiens |
ENSP00000459997 |