MidgeBase gene description page [Pn.13545]
Outline
| Gene ID | Pn.13545 |
| Type | Protein coding gene |
| Scaffold | PnScaf20215 |
| Start | 43028 |
| End | 48480 |
| Direction | - |
Sequence
Transcript: 1944 (bp)
ATGAATTACATAAACGGCTTTTACGCAGGATGGCGCGACTTGATGGACAACAAGTCAGATCCTAGAACGTCGGAATGGTTTCTGATGTCGTCACCTCTCCCAACCGCAGCCATCTGTTTGACATACGTATTCATAGTAAAGGTACTCGGACCGAAGCTCATGGAAAATAGAAAGCCCTTCAAATTAAAAAAAGTGCTGATTGTCTACAATTTTCTGCAAGTTCTGTTCAGCGCATTCCTTTTCTATGAAGCTTGTATAACGGGATGGCTCACCACCTACAACTACAGATGCCAGCCAGTCGACTTTTCACAATCACCCGTGGCAATGAGAATGACACGCGGATGTTACTGGTACTACATCAGCAAATTCACAGAGTTTCTCGACACATTCTTCTTCGTTATGCGCAAGCGATACGACCAAGTGTCAACGCTGCATGTCATCCATCACGGCGTTATGCCGTTCAGCGTTTGGTTCGGCGTCAAGTTTATGCCAGGCGGACACAGTTCGTTCTTCGGGTTCATCAACACCTTCGTTCACATCATCATGTACTTCTACTACATGCTGGCTGCGATGGGTCCACACATGCAGAAATATCTTTGGTGGAAAAAATATTTGACACTCTTGCAAATGGCTCAGTTCGTGGCGGTCATGGTGCACGCATTCCAGCTTCTTTTCCACAATCCTTGCAACTACCCACTCGCCTTCGTTTGGTGGATTGGAGGGCATGCAGTCATGTTCTACTTCCTGTTTAGCAATTTCTACAAGCAGGCCTACATAAAGAAAATCGAAGGTAAGGCGAAGAAGGGAGAGAAAACGATTGAGAACAACAACGATAACACGACAGAGAACTTCAACGAGCAGAGCAGCGGGGCACACTCACTGTACTATGCACCCTCGGAAACTGGCAAAATGGAGGAGAGCTACAGCGCGGACGTCTTACGAAAGAGAAAACGTACAATCATGGCTCACTTGTTAACAGACCTGTACGATTGGTATAATGACTTGATGGATAATCGGTCAGATTCTCGAGTCAGAGACTGGCCGATGATGAAGTCACCGATTCCAACGTTGATACTTTGTATAAGTTACGCGTACTTCTGTAAATCACTGGCTCCCCGCCTGATGAAAAATCGCAAACCATTTGATCTTAGAAAAACACTAGTTATTTATAATCTGTTTCAAACAGTATTCAGTGCGTGGATATTCTACGAGTATTTGCAAAGTGGGTGGCTGCGTGACTACAGCTATAGATGTCAGCCAGTCGACTACACACCAAAAGGATTAAGAATGGCCGAGACTTGCTGGTGGTATTACATCTCAAAGTTCACTGAATTCTTCGACACATTCTTCTTCATTCTGAGAAAAAAGTACCAGCATGTATCGACGCTTCACGTCATTCATCATGGTGTCATGCCATTTTCAGTGTGGATGGGAATGAAATTCGCTCCCGGCGGTCACAGCACTTTCTTTGCGATGTTGAACGCTTTTGTACATATTGTCATGTACTTCTACTATATGCTCGCTGCAATGGGTCCACGAGTTCAGAAGTATTTGTGGTGGAAAAAATATTTAACGGCTTTTCAAATGGTTCAGTTTGTTGCCATATTCACACATCAATTCCAACTCTTGTGGACCGAGTGCGACTATCCCAAAGGTTTCATGGTCTGGATTGGTCTTCACGGAATCATGTTTCTCTTCCTGTTCTCAGACTTTTACAAGCAGAGCTACATTGACAAGAAAGAAAAGATTCGAACTCTTAAGAAGGAGTCAGAGAATGGAAAGGTCTATCTTAACGGCAGCAATGGACAAGTACATAGTCCTATGCTCAATGGTGATGACAAGCATCTGATAATGGACCAGTGGAACGGTGGTCACGAAAAGAACAATGGTCAAACAATCACCAATGGTATTAACTCAACAAATGGATCTATTCGATCTAGAAAA
Protein: 648 (aa)
MNYINGFYAGWRDLMDNKSDPRTSEWFLMSSPLPTAAICLTYVFIVKVLGPKLMENRKPFKLKKVLIVYNFLQVLFSAFLFYEACITGWLTTYNYRCQPVDFSQSPVAMRMTRGCYWYYISKFTEFLDTFFFVMRKRYDQVSTLHVIHHGVMPFSVWFGVKFMPGGHSSFFGFINTFVHIIMYFYYMLAAMGPHMQKYLWWKKYLTLLQMAQFVAVMVHAFQLLFHNPCNYPLAFVWWIGGHAVMFYFLFSNFYKQAYIKKIEGKAKKGEKTIENNNDNTTENFNEQSSGAHSLYYAPSETGKMEESYSADVLRKRKRTIMAHLLTDLYDWYNDLMDNRSDSRVRDWPMMKSPIPTLILCISYAYFCKSLAPRLMKNRKPFDLRKTLVIYNLFQTVFSAWIFYEYLQSGWLRDYSYRCQPVDYTPKGLRMAETCWWYYISKFTEFFDTFFFILRKKYQHVSTLHVIHHGVMPFSVWMGMKFAPGGHSTFFAMLNAFVHIVMYFYYMLAAMGPRVQKYLWWKKYLTAFQMVQFVAIFTHQFQLLWTECDYPKGFMVWIGLHGIMFLFLFSDFYKQSYIDKKEKIRTLKKESENGKVYLNGSNGQVHSPMLNGDDKHLIMDQWNGGHEKNNGQTITNGINSTNGSIRSRK
| Type | Start | End | Length |
| CDS |
43031 |
43150 |
120 |
| CDS |
43212 |
43381 |
170 |
| CDS |
43456 |
43522 |
67 |
| CDS |
43805 |
44179 |
375 |
| CDS |
44258 |
44448 |
191 |
| CDS |
44532 |
44604 |
73 |
| CDS |
47293 |
47460 |
168 |
| CDS |
47520 |
47833 |
314 |
| CDS |
47908 |
48232 |
325 |
| CDS |
48340 |
48480 |
141 |
| intron |
43151 |
43211 |
61 |
| intron |
43382 |
43455 |
74 |
| intron |
43523 |
43804 |
282 |
| intron |
44180 |
44257 |
78 |
| intron |
44449 |
44531 |
83 |
| intron |
44605 |
47292 |
2688 |
| intron |
47461 |
47519 |
59 |
| intron |
47834 |
47907 |
74 |
| intron |
48233 |
48339 |
107 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_313655 |
AGAP004372-PA [Anopheles gambiae str. PEST] gb|EAA44575.5| AGAP004372-PA [Anopheles gambiae str. PEST] |
1e-132 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
3.8e-129 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.06881 |
| Pn.16864 |
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA010923-TA |
| N. vitripennis |
NV17493-PA |
| B. mori |
BGIBMGA000422-TA |
| H. melpomene |
HMEL017506-PA |
| A. gambiae |
AGAP004372 |
| T. castaneum |
TC011938 |
| C. quinquefasciatus |
CPIJ014005 |
| D. plexippus |
DPOGS215874PA |
| C. quinquefasciatus |
CPIJ001449 |
| N. vitripennis |
NV17494-PA |
| N. vitripennis |
NV17488-PA |
| D. melanogaster |
FBgn0051523 |
| D. melanogaster |
FBgn0037534 |
| A. aegypti |
AAEL009574 |
| P. vanderplanki |
Pv.06536 |
| H. sapiens |
ENSP00000424123 |
| H. melpomene |
HMEL004894-PA |
| A. aegypti |
AAEL012497 |
| H. sapiens |
ENSP00000411255 |
| D. melanogaster |
FBgn0038983 |
| A. aegypti |
AAEL014190 |
| A. mellifera |
GB19345-PA |
| A. gambiae |
AGAP007134 |
| C. quinquefasciatus |
CPIJ013819 |
| P. vanderplanki |
Pv.05044 |
| H. melpomene |
HMEL003593-PA |
| P. humanus |
PHUM047430-PA |
| P. vanderplanki |
Pv.02785 |
| N. vitripennis |
NV17485-PA |
| A. gambiae |
AGAP011812 |
| C. quinquefasciatus |
CPIJ013663 |
| B. mori |
BGIBMGA010918-TA |
| B. mori |
BGIBMGA000291-TA |
| D. plexippus |
DPOGS206871PA |
| A. gambiae |
AGAP001097 |
| A. aegypti |
AAEL012402 |
| D. melanogaster |
FBgn0053110 |
| M. musculus |
ENSMUSG00000021696 |
| A. gambiae |
AGAP003600 |
| D. plexippus |
DPOGS209920PA |
| C. quinquefasciatus |
CPIJ003687 |
| H. sapiens |
ENSP00000421043 |
| P. humanus |
PHUM576950-PA |
| A. mellifera |
GB13264-PA |
| T. castaneum |
TC011937 |
| P. vanderplanki |
Pv.10530 |
| T. castaneum |
TC016278 |
| D. plexippus |
DPOGS215920PA |
| A. aegypti |
AAEL007216 |
| H. sapiens |
ENSP00000402634 |
| S. invicta |
SI2.2.0_05845 |
| A. mellifera |
GB12176-PA |
| A. gambiae |
AGAP011848 |
| P. vanderplanki |
Pv.12539 |
| D. plexippus |
DPOGS211375PA |
| P. vanderplanki |
Pv.02784 |
| A. mellifera |
GB19268-PA |
| A. aegypti |
AAEL003093 |