MidgeBase gene description page [Pn.13544]
Outline
| Gene ID | Pn.13544 |
| Type | Protein coding gene |
| Scaffold | PnScaf20215 |
| Start | 32103 |
| End | 37402 |
| Direction | - |
Sequence
Transcript: 1059 (bp)
ATGGAAAGATGCGATAAAGAAATGGCCTTAATAATGAAATACATTGACAGTTTGCATCACTACATGGATAAATATGGAGATCCTCGAACCAAAGACTGGCCACTTATGTCATCACCATTCCACACGTTAGGAATCTGTTTAGGCTATGTGTATATTGTAAAGTACTTGGGTCCGCGTCTGATGGAGAATAGGAAGCCATTCCAATTAAAAAATACGCTAATAGTTTATAATTTACTCCAAGTTTTATTTAGTACGTGGTTATTTTATGAGATCGGAATATCCGGTTGGCTCACAGGTCACTATAATTTTCGATGTCAGCCTGTTGATTATAGCAATCACCCTAGCACACTAAGGATGTGCCATGCATGCTGGTGGTATTATTTCTCAAAGTTCACCGAATTCTTCGACACTTTCTTCTTTGTGCTTCGCAAAAAGACAAGTCAAGTGTCAACGCTTCATGTAATTCATCATGGTGTTATGCCCATGTCGGTCTGGTTTGGAGTCAAGTTCACACCCGGCGGTCACAGTACGTTCTTTGGACTGCTTAATACATTCGTGCACATCATCATGTACACTTACTATTTGCTGACGGCGATGGGTCCACAGTATCAGAAATACTTGTGGTGGAAAAAATATCTCACTGCCCTTCAAATGGTTCAATTCATACTCATCATGGTTCACGCTTTTCAACTTCTCTTCGTCGAATGCAATTATCCAAAGGCGTTTGTCTGGTGGATTGGCATGCATGCAGTAATGTTTTTCTTCTTGTTTAGAGAATTCTACAGACAATCCTACAATGCACGACAAAAGCTTAAAATGGAATCAGGGAAATTGCAGTCGAATGGTACTTACGCAAACGGTTCAGCAAAGATCAAAAAGAACGATGGTGATGATGCTTCTCTAACGGCTACAAAAGCAAATGGACATTGCAACGGTGTTTGCAAAAATGAAGCTACAACCGAATGCAATAAGGCTTCAGCATACTACGTGAGGAGTGACGACGTTACAACAAATGGAACAACGAATCTAACGCAAAGAACAAGAATCACATCTGAGCAA
Protein: 353 (aa)
MERCDKEMALIMKYIDSLHHYMDKYGDPRTKDWPLMSSPFHTLGICLGYVYIVKYLGPRLMENRKPFQLKNTLIVYNLLQVLFSTWLFYEIGISGWLTGHYNFRCQPVDYSNHPSTLRMCHACWWYYFSKFTEFFDTFFFVLRKKTSQVSTLHVIHHGVMPMSVWFGVKFTPGGHSTFFGLLNTFVHIIMYTYYLLTAMGPQYQKYLWWKKYLTALQMVQFILIMVHAFQLLFVECNYPKAFVWWIGMHAVMFFFLFREFYRQSYNARQKLKMESGKLQSNGTYANGSAKIKKNDGDDASLTATKANGHCNGVCKNEATTECNKASAYYVRSDDVTTNGTTNLTQRTRITSEQ
| Type | Start | End | Length |
| CDS |
32106 |
32354 |
249 |
| CDS |
32420 |
32575 |
156 |
| CDS |
32686 |
32849 |
164 |
| CDS |
32928 |
33006 |
79 |
| CDS |
33081 |
33137 |
57 |
| CDS |
33981 |
34064 |
84 |
| CDS |
35612 |
35719 |
108 |
| CDS |
35791 |
35873 |
83 |
| CDS |
36462 |
36527 |
66 |
| CDS |
37390 |
37402 |
13 |
| intron |
32355 |
32419 |
65 |
| intron |
32576 |
32685 |
110 |
| intron |
32850 |
32927 |
78 |
| intron |
33007 |
33080 |
74 |
| intron |
33138 |
33980 |
843 |
| intron |
34065 |
35611 |
1547 |
| intron |
35720 |
35790 |
71 |
| intron |
35874 |
36461 |
588 |
| intron |
36528 |
37389 |
862 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
Q1HRV8 |
RecName: Full=Elongation of very long chain fatty acids protein AAEL008004; AltName: Full=3-keto acyl-CoA synthase AAEL008004 |
1e-138 |
| InterPro |
IPR002076 |
GNS1/SUR4 membrane protein |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Pfam |
PF01151.13 |
GNS1/SUR4 family |
8.7e-68 |
| Pfam |
PF06570.6 |
Protein of unknown function (DUF1129) |
8.1 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. plexippus |
DPOGS215875PA |
| P. vanderplanki |
Pv.02786 |
| A. aegypti |
AAEL008004 |
| T. castaneum |
TC010977 |
| C. quinquefasciatus |
CPIJ003715 |
| P. humanus |
PHUM576820-PA |
| A. gambiae |
AGAP004373 |
| D. melanogaster |
FBgn0051522 |
| H. melpomene |
HMEL005408-PA |
| B. mori |
BGIBMGA000424-TA |
| N. vitripennis |
NV17492-PA |
| S. invicta |
SI2.2.0_04120 |
| A. mellifera |
GB14916-PA |