MidgeBase gene description page [Pn.13528]
Outline
| Gene ID | Pn.13528 |
| Type | Protein coding gene |
| Scaffold | PnScaf20147 |
| Start | 17010 |
| End | 17473 |
| Direction | - |
Sequence
Transcript: 393 (bp)
ATGGCAAAAGGAAAGGGAAATGCAAAGGCTATCAGCAAAGCTGAAAAGGCAAAGAAGGCGCTCACAATGTCCGATAATGGACTTTTGAAGAAGCATAAGAAATCACGCCGCAAGGAATCTTATGCAATCTACATTTTCAAGGTTCTTAAGCAAGTCCACCCCGACACTGGCATCTCGTCAAAGGCAATGAGCATCATGAATGCATTCGTCAATGACATTTTCGATCGCGTTACTGTTGAGGCTTCCCGCTTGGCTAAATACAATAAACGTTCGACTATCACATCGCGAGAGATCCAGACTAGTGTTCGTCTGCTTTTGCCTGGAGAACTGGCAAAACACGCAGTTTCGGAGGGCACAAAGGCCGTCACAAAGTACACAGCAACTGCTGCTAAA
Protein: 131 (aa)
MAKGKGNAKAISKAEKAKKALTMSDNGLLKKHKKSRRKESYAIYIFKVLKQVHPDTGISSKAMSIMNAFVNDIFDRVTVEASRLAKYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTATAAK
| Type | Start | End | Length |
| CDS |
17013 |
17264 |
252 |
| CDS |
17333 |
17473 |
141 |
| intron |
17265 |
17332 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001657158 |
histone H2B [Aedes aegypti] gb|EAT45040.1| histone H2B [Aedes aegypti] |
6e-46 |
| InterPro |
IPR000558 |
Histone H2B |
|
| InterPro |
IPR009072 |
Histone-fold |
|
| InterPro |
IPR007125 |
Histone core |
|
| Gene Ontology(BP) |
GO:0006334 |
nucleosome assembly |
|
| Gene Ontology(CC) |
GO:0005634 |
nucleus |
|
| Gene Ontology(CC) |
GO:0000786 |
nucleosome |
|
| Gene Ontology(MF) |
GO:0003677 |
DNA binding |
|
| Pfam |
PF00125.19 |
Core histone H2A/H2B/H3/H4 |
1.5e-22 |
| Pfam |
PF00808.18 |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
8.5e-05 |
| Pfam |
PF03847.8 |
Transcription initiation factor TFIID subunit A |
6.2e-05 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| C. quinquefasciatus |
CPIJ020276 |
| D. plexippus |
DPOGS212472PA |
| D. melanogaster |
FBgn0053874 |
| C. quinquefasciatus |
CPIJ012422 |
| T. castaneum |
TC006930 |
| C. quinquefasciatus |
CPIJ012381 |
| P. vanderplanki |
Pv.14045 |
| A. mellifera |
GB11889-PA |
| D. melanogaster |
FBgn0053884 |
| D. melanogaster |
FBgn0053894 |
| C. quinquefasciatus |
CPIJ012413 |
| A. gambiae |
AGAP012894 |
| D. melanogaster |
FBgn0053898 |
| A. aegypti |
AAEL015676 |
| M. musculus |
ENSMUSG00000096807 |
| H. sapiens |
ENSP00000445831 |
| N. vitripennis |
NV12254-PA |
| N. vitripennis |
NV12304-PA |
| H. sapiens |
ENSP00000348706 |
| T. castaneum |
TC006935 |
| A. mellifera |
GB13012-PA |
| H. melpomene |
HMEL016813-PA |
| D. melanogaster |
FBgn0053890 |
| P. vanderplanki |
Pv.06779 |
| P. vanderplanki |
Pv.11748 |
| M. musculus |
ENSMUSG00000094338 |
| H. sapiens |
ENSP00000358164 |
| D. melanogaster |
FBgn0053872 |
| D. melanogaster |
FBgn0053886 |
| M. musculus |
ENSMUSG00000069268 |
| A. gambiae |
AGAP012201 |
| P. humanus |
PHUM503990-PA |
| N. vitripennis |
NV14024-PA |
| M. musculus |
ENSMUSG00000095217 |
| S. invicta |
SI2.2.0_11146 |
| M. musculus |
ENSMUSG00000069300 |
| H. sapiens |
ENSP00000380177 |
| D. melanogaster |
FBgn0053892 |
| D. melanogaster |
FBgn0053902 |
| M. musculus |
ENSMUSG00000069308 |
| D. melanogaster |
FBgn0053876 |
| N. vitripennis |
NV14008-PA |
| A. aegypti |
AAEL015679 |
| M. musculus |
ENSMUSG00000069307 |
| H. sapiens |
ENSP00000289316 |
| N. vitripennis |
NV12138-PA |
| H. sapiens |
ENSP00000350580 |
| D. melanogaster |
FBgn0053868 |
| D. melanogaster |
FBgn0053888 |
| A. gambiae |
AGAP012202 |
| N. vitripennis |
NV10508-PA |
| N. vitripennis |
NV10347-PA |
| P. humanus |
PHUM504040-PA |
| H. sapiens |
ENSP00000366618 |
| H. sapiens |
ENSP00000303408 |
| A. aegypti |
AAEL015680 |
| N. vitripennis |
NV19249-PA |
| P. humanus |
PHUM003530-PA |
| M. musculus |
ENSMUSG00000069303 |
| H. sapiens |
ENSP00000358151 |
| A. mellifera |
GB12700-PA |
| A. aegypti |
AAEL015681 |
| D. melanogaster |
FBgn0053900 |
| H. sapiens |
ENSP00000464073 |
| P. humanus |
PHUM004160-PA |
| M. musculus |
ENSMUSG00000075031 |
| P. humanus |
PHUM003580-PA |
| N. vitripennis |
NV12297-PA |
| D. melanogaster |
FBgn0053896 |
| C. quinquefasciatus |
CPIJ012404 |
| D. plexippus |
DPOGS207205PA |
| T. castaneum |
TC005210 |
| B. mori |
BGIBMGA007320-TA |
| A. gambiae |
AGAP012560 |
| A. gambiae |
AGAP012199 |
| D. melanogaster |
FBgn0053904 |
| N. vitripennis |
NV50097-PA |
| P. humanus |
PHUM504020-PA |
| D. melanogaster |
FBgn0061209 |
| A. aegypti |
AAEL015674 |
| A. gambiae |
AGAP012710 |
| P. vanderplanki |
Pv.14769 |
| N. vitripennis |
NV14198-PA |
| D. melanogaster |
FBgn0053870 |
| S. invicta |
SI2.2.0_02789 |
| H. sapiens |
ENSP00000464485 |
| A. aegypti |
AAEL015675 |
| D. melanogaster |
FBgn0053878 |
| N. vitripennis |
NV14068-PA |
| A. aegypti |
AAEL015678 |
| M. musculus |
ENSMUSG00000062727 |
| D. melanogaster |
FBgn0053906 |
| D. melanogaster |
FBgn0053910 |
| D. melanogaster |
FBgn0053880 |
| H. sapiens |
ENSP00000462132 |
| A. aegypti |
AAEL015682 |
| N. vitripennis |
NV12302-PA |
| H. sapiens |
ENSP00000367008 |
| D. melanogaster |
FBgn0053908 |
| C. quinquefasciatus |
CPIJ012426 |
| H. sapiens |
ENSP00000446031 |
| D. melanogaster |
FBgn0053882 |
| A. mellifera |
GB12922-PA |
| A. aegypti |
AAEL015677 |
| C. quinquefasciatus |
CPIJ012391 |