MidgeBase gene description page [Pn.13506]
Outline
| Gene ID | Pn.13506 |
| Type | Protein coding gene |
| Scaffold | PnScaf19938 |
| Start | 2274 |
| End | 4240 |
| Direction | - |
Sequence
Transcript: 1329 (bp)
ATGAGAAAATCAAAACAAAACCATTTGGCTATTTTTAGACGAGCGCCTTTCCCGCGCGGTCTTGAAGACGTCTTCTACACGTACTGCTGGATTCTGAAGAACTGTGCGCTCATCGGCTCGACCGGCGAGAACATTGTGTTTTGCGGCGATTCGGCCGGCGCCAATTTGAACAGCGCCTGCGTGATCAAGTGCATCGAGATGGGAATTCCGCCGGTCAAGGGAATCTTCAATGCCTACAGTCCCTTCTTGGTGAACTTTGCGCAAACGCCCGCCCGGTATTTGGTCGTGCAGGACCCGCTCGTTCCGTATGGTTTCATCATGAGAATTTTTAAGACCTACGGCACATCTGCGCTGCCCGAAAACAAAACAGGAGACGACGAGAACAACAATGACGGTGCGGAAAGCAACACTTGCGCTTCTCCAGAACTTGTCACAGATGTCCGCGACGATCGCGAGAGCGGCACACTTTTGTCGCCCGATAGCACGAAGTCGATCGAGGCGATTTGGCAGAAAGTGAAGCACAGCACCGAGCCCGAGTGGCACTCGAATTTGAACTCGATTCAGGAGACGGCGAGCGAGGAGCCGGTGTCGCCGATGGTCTACCGAAGTGACAGCCTCGTCGAGCCGACCTTTTCTGCCGCCTCCATCTACGACGAGGACGACGTTCTCGAGATGAAGATTGACGAGAAGCGAGAGACGGCGAACGAGACGAAGAAGGACGAGGATTTCGTCAGTGATTTTGTCAAAAAATATGATACAAAAAGCAGCGCTAGTGATTCAATTGGCAGTCAGCAGCCGTCGGGTCGACCCCGTCTGAGCTCACGAACGCTGAGTGAGGAGAACATCGTCGTAGACATCGGCAGAGATGCATTGACCGTAGAAGGCCTGCAAGCTGCCGTCGCAAACATGAAAACCTCGGCCAGCTCTTCGAACGAGAACCCGGACAAACAAGGCGCTTCTGAAGCTCAGCTGAAGCGAAACTTCGCCTTTAGCGATCACCGCGACCGCGGAAGCGAGGGCATTCCGAAAGCCCCCGACGATGAGTTTGTCTTCACGGTGCCGCGAAACCATCACATGTCGCCTTATATAGCGCCCGACGACGTTCTGAGGCAATTTCCCAAAACGAACGTCTTGACGACCATCGCCGACCCTTGCATAGACGACTGCGTGGAGTTCGCCAAAAAACTGCGCTCGCTCAACGTCGACGTCGAGCTGGACATTCTCGGCGCTCTGCCGCACGGCTTCCTCAACTTTGCACACGTATCGAACGACTGCCACGAGGCATCGATGCTGTGCATGAAGAGGATCGCACACCTCCTCGGAATGGAG
Protein: 443 (aa)
MRKSKQNHLAIFRRAPFPRGLEDVFYTYCWILKNCALIGSTGENIVFCGDSAGANLNSACVIKCIEMGIPPVKGIFNAYSPFLVNFAQTPARYLVVQDPLVPYGFIMRIFKTYGTSALPENKTGDDENNNDGAESNTCASPELVTDVRDDRESGTLLSPDSTKSIEAIWQKVKHSTEPEWHSNLNSIQETASEEPVSPMVYRSDSLVEPTFSAASIYDEDDVLEMKIDEKRETANETKKDEDFVSDFVKKYDTKSSASDSIGSQQPSGRPRLSSRTLSEENIVVDIGRDALTVEGLQAAVANMKTSASSSNENPDKQGASEAQLKRNFAFSDHRDRGSEGIPKAPDDEFVFTVPRNHHMSPYIAPDDVLRQFPKTNVLTTIADPCIDDCVEFAKKLRSLNVDVELDILGALPHGFLNFAHVSNDCHEASMLCMKRIAHLLGME
| Type | Start | End | Length |
| CDS |
2277 |
2345 |
69 |
| CDS |
2428 |
2938 |
511 |
| CDS |
3419 |
4125 |
707 |
| CDS |
4199 |
4240 |
42 |
| intron |
2346 |
2427 |
82 |
| intron |
2939 |
3418 |
480 |
| intron |
4126 |
4198 |
73 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_312370 |
AGAP002567-PA [Anopheles gambiae str. PEST] gb|EAA08041.5| AGAP002567-PA [Anopheles gambiae str. PEST] |
2e-78 |
| InterPro |
IPR013094 |
Alpha/beta hydrolase fold-3 |
|
| Gene Ontology(BP) |
GO:0008152 |
metabolic process |
|
| Gene Ontology(MF) |
GO:0016787 |
hydrolase activity |
|
| Pfam |
PF07859.8 |
alpha/beta hydrolase fold |
1.5e-17 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.13949 |
| Pn.13933 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.05611 |
| D. melanogaster |
FBgn0034491 |
| T. castaneum |
TC008216 |
| M. musculus |
ENSMUSG00000003123 |
| N. vitripennis |
NV12945-PA |
| A. aegypti |
AAEL005706 |
| S. invicta |
SI2.2.0_07777 |
| A. gambiae |
AGAP002567 |
| P. vanderplanki |
Pv.16772 |
| H. sapiens |
ENSP00000244289 |
| C. quinquefasciatus |
CPIJ015981 |
| A. mellifera |
GB17559-PA |
| P. humanus |
PHUM288260-PA |
| D. plexippus |
DPOGS206593PA |