MidgeBase gene description page [Pn.13503]
Outline
| Gene ID | Pn.13503 |
| Type | Protein coding gene |
| Scaffold | PnScaf19933 |
| Start | 655 |
| End | 2111 |
| Direction | - |
Sequence
Transcript: 876 (bp)
ATGTCGAATTTGGAGGAACCAGAGATTTCGGACACTGAGAAAATACGCATAGTTAGCGACTTCATCCTGCACGCACCGCCAGGAGAATTCAATGAAGTGTTCAACGACGTCCGAGTTTTGCTTAAAAACGATAATTTACTGAAAGAGAAGGCGGGCTCTGCTTTTGCACAATACAACAAGGATCAATTAACACCAGTACGCTTGGAGAGCACCGAAACCTTCGCATTAATAACAGAATACAACGATTTAGGTGCTGGAAGGTTTTACGATCCTCGCACAAAACAATCATTCAAGTTTGATCACTTACGGAAGGAGGCCTCGGATTTCCAGAACTACGAGCCGGATCCGGTCGCCGAATCATGGCGCTCGGCCCTCGAGGAGGAGGCAACGCAATACACTGATAATCACTATCGTCACGGTATTTGTTCCGTTTTTGGTCGCAACGATCCTTCGACAAATCAAATTACACTCTCGTTGTGTATCGAGGACCACCAGTTTCAGCCACAGAACTATTGGAACGGAAGATGGCGTTCCCAGTGGAATTTCACCTTCTCCAATAGTGGAAGCGGTGCCGCCGAGATCAAAGGTGTACTCAAAGTTCAGGTTCATTACTACGAGGACGGTAATGTTCAGCTAGTATCATCGAAAGAGTGTCGCGAGTCAGTGATTATCTCGAACGAGATCCAGACGGCGAAGGAAATCATAAAAGTAGTTGAGGAAAGCGAGCAAGACTATCAAATGGCGATATCAGAGAACTATCAGACGATGTCGGACACGACATTCAAGGCACTCCGTCGCCAGTTGCCGGTGACACGCACGAAAATCGATTGGGCCAAAATTGTATCGTATTCGATTGGAAAAGAGCTAAAAACGCAA
Protein: 292 (aa)
MSNLEEPEISDTEKIRIVSDFILHAPPGEFNEVFNDVRVLLKNDNLLKEKAGSAFAQYNKDQLTPVRLESTETFALITEYNDLGAGRFYDPRTKQSFKFDHLRKEASDFQNYEPDPVAESWRSALEEEATQYTDNHYRHGICSVFGRNDPSTNQITLSLCIEDHQFQPQNYWNGRWRSQWNFTFSNSGSGAAEIKGVLKVQVHYYEDGNVQLVSSKECRESVIISNEIQTAKEIIKVVEESEQDYQMAISENYQTMSDTTFKALRRQLPVTRTKIDWAKIVSYSIGKELKTQ
| Type | Start | End | Length |
| CDS |
658 |
930 |
273 |
| CDS |
997 |
1349 |
353 |
| CDS |
1794 |
1961 |
168 |
| CDS |
2030 |
2111 |
82 |
| intron |
931 |
996 |
66 |
| intron |
1350 |
1793 |
444 |
| intron |
1962 |
2029 |
68 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NP_611539 |
capping protein alpha [Drosophila melanogaster] ref|XP_002039694.1| GM15798 [Drosophila sechellia] ref|XP_002082417.1| GD11558 [Drosophila simulans] sp|Q9W2N0.1|CAPZA_DROME RecName: Full=F-actin-capping protein subunit alpha gb|AAF46660.1| capping protein alpha [Drosophila melanogaster] gb|AAL39229.1| GH10050p [Drosophila melanogaster] gb|EDW56559.1| GM15798 [Drosophila sechellia] gb|EDX08002.1| GD11558 [Drosophila simulans] gb|ACL85055.1| cpa-PA [synthetic construct] gb|ACL90007.1| cpa-PA [synthetic construct] |
1e-130 |
| InterPro |
IPR002189 |
WASH complex, F-actin capping protein, alpha subunit |
|
| InterPro |
IPR017865 |
F-actin capping protein, alpha subunit, conserved site |
|
| Gene Ontology(BP) |
GO:0030036 |
actin cytoskeleton organization |
|
| Gene Ontology(CC) |
GO:0008290 |
F-actin capping protein complex |
|
| Gene Ontology(MF) |
GO:0003779 |
actin binding |
|
| Pfam |
PF01267.12 |
F-actin capping protein alpha subunit |
6e-96 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.03107 |
| P. humanus |
PHUM596730-PA |
| D. plexippus |
DPOGS206006PA |
| C. quinquefasciatus |
CPIJ011272 |
| B. mori |
BGIBMGA012665-TA |
| A. aegypti |
AAEL013778 |
| D. melanogaster |
FBgn0034577 |
| T. castaneum |
TC009328 |
| M. musculus |
ENSMUSG00000015733 |
| H. melpomene |
HMEL014606-PA |
| S. invicta |
SI2.2.0_02451 |
| M. musculus |
ENSMUSG00000070372 |
| N. vitripennis |
NV11577-PA |
| H. sapiens |
ENSP00000263168 |
| A. mellifera |
GB18967-PA |
| A. gambiae |
AGAP006141 |
| H. sapiens |
ENSP00000354947 |