MidgeBase gene description page [Pn.13499]
Outline
| Gene ID | Pn.13499 |
| Type | Protein coding gene |
| Scaffold | PnScaf19923 |
| Start | 66 |
| End | 9908 |
| Direction | - |
Sequence
Transcript: 957 (bp)
ATGATGAGAAACATGAGTGTGAAATTGGATAGTTCTGTGCTGCCCGTGATTATTCTTGCGGTCTCGTGTCTCTGCAGCTCCGCCATAGCACTGAAGGCACCGGTAATCGTGGAGCACCCGGTCGATAGCATTCAACCGCGCGATAGCCCCTACACGCTCAACTGCAAGGCAGAGGGCACGCCCGAGCCCAAAATCGAGTGGTACAAAGACGGCAAACGACTGACGATCGAGCCGTCGCGCCAAATTCTGCTGCCGAGCGGCGATCTGATGATCCTCTCGGTCTCGAACTCGAAGCGTGAGAACGACGGCGGAGTTTACTGGTGCGAGGCTCACAACGAAGTCGGCACTGCGCGCAGTCGGAATGCGACGCTAAAGGTCGCGACTCTACGCGAGGAATTCCGTCTCAACCCGCAAAATACCTACGCGGCCGACGGCGAAATGGTGATGCTGGAATGCGGACCGCCGCGCGGCAATCCCGAGCCGCAGATCTCGTGGCGCAAAAACGGCCAGGTGATGGACTTGAGCGGATCGAAACGAATTCGCATTGTCGATGGCGGTAATTTGGTCATTCAGAATGCCCAGCAGTCGGACGACGGACGTTATCAGTGCATTGCCAAAAATGTCGTCGGCGTACGTGAGTCAAAGCCGGCCATGCTGAAGGTTTATGTTAAGCCGTTCCTCATACGTGGACCACAGAACCAGACTGTCGTCACCGGCAGCTCCGTTATTTTCCAGTGTCGGGTGGGCGGCGAACCTCTGCCCGATGTGCTGTGGCGTCGCACGGCGTCAGGTGGAAACATGCCTTTGGATCGAGTTCACATACTCGCAGACAGAAGCCTTAAAATCGACAACATCACAATGGAAGACATCGGCGAGTACAGCTGCGAAGCTGAAAATGCTGCCGGAGCGATTGTTGCGTCGGGAACGCTGCTCGTTCACTCTCGGCGACCTCGGCAG
Protein: 319 (aa)
MMRNMSVKLDSSVLPVIILAVSCLCSSAIALKAPVIVEHPVDSIQPRDSPYTLNCKAEGTPEPKIEWYKDGKRLTIEPSRQILLPSGDLMILSVSNSKRENDGGVYWCEAHNEVGTARSRNATLKVATLREEFRLNPQNTYAADGEMVMLECGPPRGNPEPQISWRKNGQVMDLSGSKRIRIVDGGNLVIQNAQQSDDGRYQCIAKNVVGVRESKPAMLKVYVKPFLIRGPQNQTVVTGSSVIFQCRVGGEPLPDVLWRRTASGGNMPLDRVHILADRSLKIDNITMEDIGEYSCEAENAAGAIVASGTLLVHSRRPRQ
| Type | Start | End | Length |
| CDS |
69 |
85 |
17 |
| CDS |
180 |
311 |
132 |
| CDS |
973 |
1113 |
141 |
| CDS |
1184 |
1314 |
131 |
| CDS |
2300 |
2747 |
448 |
| CDS |
9821 |
9908 |
88 |
| intron |
86 |
179 |
94 |
| intron |
312 |
972 |
661 |
| intron |
1114 |
1183 |
70 |
| intron |
1315 |
2299 |
985 |
| intron |
2748 |
9820 |
7073 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001661212 |
roundabout [Aedes aegypti] gb|EAT36999.1| roundabout [Aedes aegypti] |
1e-120 |
| InterPro |
IPR003598 |
Immunoglobulin subtype 2 |
|
| InterPro |
IPR007110 |
Immunoglobulin-like |
|
| InterPro |
IPR013783 |
Immunoglobulin-like fold |
|
| InterPro |
IPR003599 |
Immunoglobulin subtype |
|
| InterPro |
IPR013098 |
Immunoglobulin I-set |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00047.20 |
Immunoglobulin domain |
1.8e-22 |
| Pfam |
PF07354.7 |
Zona-pellucida-binding protein (Sp38) |
0.05 |
| Pfam |
PF08205.7 |
CD80-like C2-set immunoglobulin domain |
4.7e-12 |
| Pfam |
PF07679.11 |
Immunoglobulin I-set domain |
5.7e-46 |
| Pfam |
PF13895.1 |
Immunoglobulin domain |
8.2e-40 |
| Pfam |
PF13927.1 |
Immunoglobulin domain |
3.1e-25 |
| Pfam |
PF07686.12 |
Immunoglobulin V-set domain |
1.2e-15 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.01648 |
| Pn.10407 |
| Pn.04008 |
| Pn.11655 |
| Pn.00439 |
Orthologous genes
| Species |
Gene ID |
| H. sapiens |
ENSP00000418117 |
| D. melanogaster |
FBgn0005631 |
| D. melanogaster |
FBgn0002543 |
| H. sapiens |
ENSP00000327536 |
| B. mori |
BGIBMGA000888-TA |
| A. aegypti |
AAEL015056 |
| P. vanderplanki |
Pv.05732 |
| H. sapiens |
ENSP00000420321 |
| A. gambiae |
AGAP010970 |
| P. humanus |
PHUM280320-PA |
| H. sapiens |
ENSP00000418344 |
| D. plexippus |
DPOGS211939PA |
| P. humanus |
PHUM175080-PA |
| A. aegypti |
AAEL015183 |
| A. aegypti |
AAEL005011 |
| D. melanogaster |
FBgn0041097 |
| A. gambiae |
AGAP010969 |
| H. sapiens |
ENSP00000441797 |
| H. sapiens |
ENSP00000417335 |
| C. quinquefasciatus |
CPIJ010116 |
| C. quinquefasciatus |
CPIJ009217 |
| A. mellifera |
GB17658-PA |
| A. gambiae |
AGAP010242 |
| H. sapiens |
ENSP00000417164 |
| P. vanderplanki |
Pv.09288 |
| T. castaneum |
TC002775 |
| A. aegypti |
AAEL010961 |
| H. sapiens |
ENSP00000420637 |
| M. musculus |
ENSMUSG00000052516 |
| M. musculus |
ENSMUSG00000032128 |
| A. aegypti |
AAEL005002 |
| T. castaneum |
TC006743 |
| H. melpomene |
HMEL012812-PA |
| H. sapiens |
ENSP00000406043 |
| A. gambiae |
AGAP010245 |
| P. vanderplanki |
Pv.09950 |
| S. invicta |
SI2.2.0_15377 |
| P. vanderplanki |
Pv.03375 |
| M. musculus |
ENSMUSG00000022883 |
| N. vitripennis |
NV50401-PA |
| H. sapiens |
ENSP00000417992 |
| A. aegypti |
AAEL006901 |
| C. quinquefasciatus |
CPIJ011943 |
| H. sapiens |
ENSP00000380903 |