MidgeBase gene description page [Pn.13476]
Outline
| Gene ID | Pn.13476 |
| Type | Protein coding gene |
| Scaffold | PnScaf19762 |
| Start | 3866 |
| End | 5359 |
| Direction | + |
Sequence
Transcript: 870 (bp)
ATGGTGCCGAAAACTGTGACAAAGGCTGACAATAATAACAACAACAGCGATGAGACTGTCGCGAAGAATGAACGAGAGGTGCCGTCGCTATACGGCAAGGACGACGTGAAGCTCGACATTGTGTGGCGGAACGTCCTCATCTTCGTGTACCTGCACGGTTGTGCCGTCTACAGCCTCTTCCTCCAGAAGCAGACGTCGTCGATTGTGATCGCCTGGGTGTTTAGCTTGATGGCCGCGTTCGGCGTCACCATCGGCGCTCACCGGCTCTACACGCACCGTTCGTTCCGCGCCAACAAAATCCTGCAAGTCATCCTCCTCACGTGGCAGACGATGGCGGTGCAGAACTCGATGTACGAGTGGGTGCGCGACCACCGCTCTTTCAGCCACGCCTGGCACGGAAACATGTTTCGGTATCTGGTGGTGCTGCATCTCGTCTGGTGCATCAACTCGGTCGCGCACTACTGGGGCTACAAGCCCTTCGACAAAAACATTTCGCCGACGGACTCGTATCTGGTCGGAACGTTCGGCCTGGGTGAAGGTTGGCACAACTATCATCACGTTTTTCCGTTCGACTACAAGTGTGCAGAGCCACCAACACACTGGTGTAATCTTTCGCTCATGCTCATCGACTTCTTCGCCTATCTCGGTTGGGCGACTGACTTGAAGACCGTCTCGAAGGCGACCGTCATGAGGCGCATGGAGCGAACAGGTGACGGAACGAGGCAGCTTACGAGCGAGAGTCAGAGCACGCGCACTGTCAAGGAAGTTCTCACCGACAGCAAGCACAACGACATATGGGGCTTCGGCGACTCGGACATGACGAGCGAGTACCGCGACTGTGTCGAGATTTGCCACAAGAAATTCGATCAG
Protein: 290 (aa)
MVPKTVTKADNNNNNSDETVAKNEREVPSLYGKDDVKLDIVWRNVLIFVYLHGCAVYSLFLQKQTSSIVIAWVFSLMAAFGVTIGAHRLYTHRSFRANKILQVILLTWQTMAVQNSMYEWVRDHRSFSHAWHGNMFRYLVVLHLVWCINSVAHYWGYKPFDKNISPTDSYLVGTFGLGEGWHNYHHVFPFDYKCAEPPTHWCNLSLMLIDFFAYLGWATDLKTVSKATVMRRMERTGDGTRQLTSESQSTRTVKEVLTDSKHNDIWGFGDSDMTSEYRDCVEICHKKFDQ
| Type | Start | End | Length |
| CDS |
3866 |
3935 |
70 |
| CDS |
4020 |
4324 |
305 |
| CDS |
4536 |
4645 |
110 |
| CDS |
4723 |
4775 |
53 |
| CDS |
4850 |
4869 |
20 |
| CDS |
4950 |
5037 |
88 |
| CDS |
5133 |
5356 |
224 |
| intron |
3936 |
4019 |
84 |
| intron |
4325 |
4535 |
211 |
| intron |
4646 |
4722 |
77 |
| intron |
4776 |
4849 |
74 |
| intron |
4870 |
4949 |
80 |
| intron |
5038 |
5132 |
95 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFN62032 |
Acyl-CoA Delta(11) desaturase [Camponotus floridanus] |
6e-37 |
| InterPro |
IPR015876 |
Fatty acid desaturase, type 1, core |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016717 |
oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water |
|
| Pfam |
PF00487.19 |
Fatty acid desaturase |
0.00028 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes