MidgeBase gene description page [Pn.13442]
Outline
| Gene ID | Pn.13442 |
| Type | Protein coding gene |
| Scaffold | PnScaf19625 |
| Start | 2903 |
| End | 7424 |
| Direction | - |
Sequence
Transcript: 1524 (bp)
ATGTGCGCACGCATATTCAAGATGAGCTCCTTCGACGGCCCGGAAACGCACTCGTTCTTCTTCGAAGGCTCATCCTTTGACTTCCTCACGTCGTCCGATTACCCAATCGTCAACACATCGGCGCTCATTTATCACAATGGCGATCACATGCTAAACGACTCGTTCTTCATGAATTGCCCATCCGCCGGGCCCAATAATCTCGGCCGCTACATATCGATGATACTGTTCACCGTCGTGTGCATTATTGGACTTTTCGGGAATAGTTTAGTGATATACGTCGTGCTACGATTCAGCAAAATGAAGACAGTGACGAATTTGTATATTCTGAATTTGGCGCTCGCCGACGAGTTCTATCTCATCGGCGTGCCGACATTGATTTATACCATGCACTTGGGTGAATGGATTTTCGGCGTTCACATGTGTAAACTCTACATGATATCGACGAGCATTACGCAGTTCACATCATCAATTTTTCTCGTCATTATGTCGGCCGACAGATACATCGCAGTGTGCCACCCAATCTCATCGCCGCGCTTTCGAACGCCACTCGTATCCAAAATTGTGTCGCTCATCGCGTGGTGCTTGTCGATCACAATGATGATTCCCATCATTCTCTACTCGACCACGATTCCACGAATGGATGGCAAGAAGTCGTGCAACATTGTGTGGCCAACAAGTGGCAACAAGCCCAACAGCACGGGACACGACGAGGATGGGCTTATCGAGCCAAACGGATCGACTTTTACGCTCTACACATTCACGTTGGGCTTCGCCATACCGCTCTGTCTCATACTCGTGTTTTACTACCTCGTTCTACGCAAGCTGAGGACGGTCGGACCGAAAACCAAATCGAAAGAGAAGAAGAGATCGCATCGCAAAGTGACCAAGCTTGTACTCACTGTCGTTGCTGTCTACATTCTGTGCTGGACGCCGTACTGGGTCAGCCAAATGGCATTAATAAATTCGTCGCCGGAAATTTGCCAATCGAAGCTGGAAATTACAATTTTCATATTGGTCGGCTGTTTAGGATATAGCAATTCTGCGATGAATCCCATCCTGTATGCCTTTTTGTCGGATAACTTTAAGAAGTCGTTTATGAAGGCATTCACGTGTGCCAAGACAAATGAGATCAATGCACAGCTGCAGGCGGAGAACAGCTTCTTTCCGCGCTTCGGTCGCGGCAAAAACTCCGATTGCCTTTCCTCGAAGCCTACGCAGAACCTAATTGTAAATGTAAACTCGCAGGTGACATCGACAAAGCTCGCACAATCAACGAAGCTCGGCAACACCGTCGAGTCAATATTGGACGTGACGGAGAATGGTCACACGACGAATGGACATCAGCTGAACAGCACAAACAACAACAACAACAACGGGCTCAGAGCGTACAATGTTGGCGCGTCAAACGACGACGAGAGCGACGACGAGGACCAGGAGATGCAGGACAAACGGCAGGACGAAGCCATTTGCATAATCAATCCCACTAACGGCATGAGCAAGCCACCTGTTCTGCACACCGACCTC
Protein: 508 (aa)
MCARIFKMSSFDGPETHSFFFEGSSFDFLTSSDYPIVNTSALIYHNGDHMLNDSFFMNCPSAGPNNLGRYISMILFTVVCIIGLFGNSLVIYVVLRFSKMKTVTNLYILNLALADEFYLIGVPTLIYTMHLGEWIFGVHMCKLYMISTSITQFTSSIFLVIMSADRYIAVCHPISSPRFRTPLVSKIVSLIAWCLSITMMIPIILYSTTIPRMDGKKSCNIVWPTSGNKPNSTGHDEDGLIEPNGSTFTLYTFTLGFAIPLCLILVFYYLVLRKLRTVGPKTKSKEKKRSHRKVTKLVLTVVAVYILCWTPYWVSQMALINSSPEICQSKLEITIFILVGCLGYSNSAMNPILYAFLSDNFKKSFMKAFTCAKTNEINAQLQAENSFFPRFGRGKNSDCLSSKPTQNLIVNVNSQVTSTKLAQSTKLGNTVESILDVTENGHTTNGHQLNSTNNNNNNGLRAYNVGASNDDESDDEDQEMQDKRQDEAICIINPTNGMSKPPVLHTDL
| Type | Start | End | Length |
| CDS |
2906 |
3401 |
496 |
| CDS |
3474 |
3562 |
89 |
| CDS |
4808 |
5249 |
442 |
| CDS |
5529 |
5738 |
210 |
| CDS |
5858 |
6137 |
280 |
| CDS |
7418 |
7424 |
7 |
| intron |
3402 |
3473 |
72 |
| intron |
3563 |
4807 |
1245 |
| intron |
5250 |
5528 |
279 |
| intron |
5739 |
5857 |
119 |
| intron |
6138 |
7417 |
1280 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR29674 |
hypothetical protein AND_01169 [Anopheles darlingi] |
1e-132 |
| InterPro |
IPR017452 |
GPCR, rhodopsin-like superfamily |
|
| InterPro |
IPR000586 |
Somatostatin receptor |
|
| InterPro |
IPR000276 |
GPCR, rhodopsin-like, 7TM |
|
| Gene Ontology(BP) |
GO:0007186 |
G-protein coupled receptor signaling pathway |
|
| Gene Ontology(CC) |
GO:0016021 |
integral to membrane |
|
| Gene Ontology(MF) |
GO:0004994 |
somatostatin receptor activity |
|
| Pfam |
PF10320.4 |
Serpentine type 7TM GPCR chemoreceptor Srsx |
2.3e-12 |
| Pfam |
PF10328.4 |
Serpentine type 7TM GPCR chemoreceptor Srx |
0.0022 |
| Pfam |
PF10324.4 |
Serpentine type 7TM GPCR chemoreceptor Srw |
5.2e-07 |
| Pfam |
PF00001.16 |
7 transmembrane receptor (rhodopsin family) |
1.3e-57 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000047904 |
| H. sapiens |
ENSP00000350198 |
| A. gambiae |
AGAP010486 |
| N. vitripennis |
NV15867-PA |
| P. humanus |
PHUM101310-PA |
| A. mellifera |
GB20155-PA |
| A. gambiae |
AGAP012268 |
| M. musculus |
ENSMUSG00000035431 |
| H. sapiens |
ENSP00000255008 |
| B. mori |
BGIBMGA006675-TA |
| S. invicta |
SI2.2.0_02583 |
| P. vanderplanki |
Pv.09553 |
| C. quinquefasciatus |
CPIJ011191 |
| T. castaneum |
TC012842 |
| A. aegypti |
AAEL012356 |
| H. melpomene |
HMEL010877-PA |
| M. musculus |
ENSMUSG00000037014 |
| H. sapiens |
ENSP00000326616 |
| C. quinquefasciatus |
CPIJ010469 |
| D. plexippus |
DPOGS213889PA |
| A. aegypti |
AAEL012920 |
| D. melanogaster |
FBgn0036789 |
| H. sapiens |
ENSP00000267377 |
| P. vanderplanki |
Pv.07563 |