MidgeBase gene description page [Pn.13416]
Outline
| Gene ID | Pn.13416 |
| Type | Protein coding gene |
| Scaffold | PnScaf19451 |
| Start | 4235 |
| End | 5421 |
| Direction | + |
Sequence
Transcript: 456 (bp)
ATGAGAAGACTCAGTCTGTTGAATTTCCTGCTCATTTTGGGCACAAAAGTTGGCTTCCTGCGAGGCGAGCTGCCATGCGATTTGACGCCCGCCTCGTGCGGCTACCTCACCGTCCTCGACCCGGCCAAGTGCGAGTGCGTGTGCTCGAGCGACAGCGCCTTCTCCCTCTGCCCCTACAGCGAGTACGTCAACGAGGCCAACGCCTGTCCCTGCATGCAGCAAATCTCGGGAGGCGTGAGCACCACCGGCGAGGTTGTGCTGGCGAACGGCACGATCATCAAGTGCCCGCCGCAGTACTGCCCGCCCCCGAAAATCTTCTGGGATCCGGCGCAGTGCAAGTGCATCTGCAATCCGGCCGTCGACTGCCTTCATCCGACCTACGTGATGAACCCGAACACCTGCGAGTGTGACTGCGCAAATCCGCCGATTTGTCTGGAATCCTTCTACGTGCAGATG
Protein: 152 (aa)
MRRLSLLNFLLILGTKVGFLRGELPCDLTPASCGYLTVLDPAKCECVCSSDSAFSLCPYSEYVNEANACPCMQQISGGVSTTGEVVLANGTIIKCPPQYCPPPKIFWDPAQCKCICNPAVDCLHPTYVMNPNTCECDCANPPICLESFYVQM
| Type | Start | End | Length |
| CDS |
4235 |
4274 |
40 |
| CDS |
4651 |
4821 |
171 |
| CDS |
4899 |
5093 |
195 |
| CDS |
5289 |
5312 |
24 |
| CDS |
5393 |
5418 |
26 |
| intron |
4275 |
4650 |
376 |
| intron |
4822 |
4898 |
77 |
| intron |
5094 |
5288 |
195 |
| intron |
5313 |
5392 |
80 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NA |
No hit found |
NA |
| Pfam |
PF03128.9 |
CXCXC repeat |
0.00099 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes