MidgeBase gene description page [Pn.13415]
Outline
| Gene ID | Pn.13415 |
| Type | Protein coding gene |
| Scaffold | PnScaf19451 |
| Start | 466 |
| End | 3160 |
| Direction | + |
Sequence
Transcript: 1758 (bp)
ATGCTCATCTTGCTGAATTTCCTGCTCGTTTTGGGCACAAAAGTTGGCTTCCTGCGAGGCGAGCTGCCATGCGATTTGACGCCCGCCTCGTGCGGCTACCTCACCGTCCTCGACCCGGCCAAGTGCGAGTGCGCGTGCTCGAGCGACAGCGCCTTCTCCCTCTGCCCCTACAGCGAGTACGTCAACGAGGCCAACGCCTGTCCCTGCATTCAGCAGCTGACTGGCGGAGGCACAACCGAGGTGCAGCTGGAAAACGGCACCGTCATCAAGTGCCCGCCACGGCTCTGTTCTCCGCCGAAGACTTTCTGGGATCCGGAGCAGTGCAGGTGCACGTGCAACCCCACGATCAGGTGCCGACCGCCGACGTCCCTCAATGCAAACACCTGCGAGTGCGACTGCTTGAACCCACCGAGCTGCAGGTCCAATCAGATCCTCGACAAGGAGACGTGCCGGTGCCGGTGCCCGGACGACTGTGGCGGATGCCGGCAGCCGCAGACTTGGAACGCTCGGAGCTGCAGCTGCGAGTGTCCGACAACGTCTGCGTGTCCTACGAACAAATTCTGGGACTTTCACGAGTGCAAATGTCTTTGCAGACAAAACCAGATCAGCTGCTGTCCTCCGCGAGTTTGGAGCCCCGACACTTGTCAATGCCAATGTCCCAGAGTCGAAACTTGCCCGACTGGCCAAGTGTGGGACAACGAGCTGTGCCAGTGCGTTTGTAGGAGAGTTTCCGTGTGTCAACCGCCGTCCGTTTGGAACGAAAAATCTTGCCAATGCAGCTGCCCGCCCATTTCGTGCCTCCCGAATTTCGTCTTCAACCCGGTCACATGTCGATGCACTTGCGACCGACGACTCGCTGTCCTCTGCCGGCCGCCTCACGCCTGGGACGCGCAGCGCTGCCGCTGCCGATGCGCCAATGGTTGCCTGCCCATTCAGATCCAGAATCCACTGACCTGCGCCTGCAAGTGCCCGGAAATTAAATGCCCTGCCAACCACATCCTCGACCCGAAAACCTGCCAGTGCGTTTGCAACAAAGAGCTTGCGATTCGCTGCCGTGCGCCTCGCACTTGGAACGACCGAAACTGCTCCTGCGACTGCAACATCGAGTGCGCGCCGAACTACGTTCTGAATCCCGAAACGTGCGAGTGCGTTTGCAACAAGGAACTTGCCGAAAAATGCGAGTCTCCCCGCACTTGGAACGCTCAAACCTGCGCCTGCGAGTGCAACGTGAAGTGCCCGCAAAATTACGTTTTAAACCCTGAAACTTGCGAGTGCGTTTGCAGCAAGGAACTGGCCACAAAGTGCGAGTCTCCCCGCTTTTGGAACGACCGAAACTGTTCGTGCGATTGCGGCATCGAGTGCGCGTCGAACTACGTTCTGAACCCCGAAACCTGCGCGTGCGACTGCGACAGAAGCTTAGCAATCACGTGCCTCGAGCCCAACACCTGGGACCTCGAAAACTGCCAGTGCAAGTGCGCCAAAGAGTGCCCTCCAAACACCCCGCAAGATCCGGCGACCTGCGAGTGCGAGTGCGCCAAGGAGCTGTCGCTGCGCTGCCTTCCGCCCAACGCTTGGGACCACGACGCTTGTCGCTGCAAATGCGCCGCCGAATGCTCGCCGAACTTCGTCCAGAACCCGCTGACCTGCGCGTGCAACTGTCGGCCGGTTCAGTGCCCCTCCGACTTCGTCCAGGACCCGAAGTCATGCTTGTGCGTGTGCGATCCGAGTAGAGCGGACTCGTGTCCTTTGTCGACGGAT
Protein: 586 (aa)
MLILLNFLLVLGTKVGFLRGELPCDLTPASCGYLTVLDPAKCECACSSDSAFSLCPYSEYVNEANACPCIQQLTGGGTTEVQLENGTVIKCPPRLCSPPKTFWDPEQCRCTCNPTIRCRPPTSLNANTCECDCLNPPSCRSNQILDKETCRCRCPDDCGGCRQPQTWNARSCSCECPTTSACPTNKFWDFHECKCLCRQNQISCCPPRVWSPDTCQCQCPRVETCPTGQVWDNELCQCVCRRVSVCQPPSVWNEKSCQCSCPPISCLPNFVFNPVTCRCTCDRRLAVLCRPPHAWDAQRCRCRCANGCLPIQIQNPLTCACKCPEIKCPANHILDPKTCQCVCNKELAIRCRAPRTWNDRNCSCDCNIECAPNYVLNPETCECVCNKELAEKCESPRTWNAQTCACECNVKCPQNYVLNPETCECVCSKELATKCESPRFWNDRNCSCDCGIECASNYVLNPETCACDCDRSLAITCLEPNTWDLENCQCKCAKECPPNTPQDPATCECECAKELSLRCLPPNAWDHDACRCKCAAECSPNFVQNPLTCACNCRPVQCPSDFVQDPKSCLCVCDPSRADSCPLSTD
| Type | Start | End | Length |
| CDS |
466 |
499 |
34 |
| CDS |
561 |
731 |
171 |
| CDS |
791 |
976 |
186 |
| CDS |
1042 |
1170 |
129 |
| CDS |
1245 |
1287 |
43 |
| CDS |
1681 |
1742 |
62 |
| CDS |
1807 |
1950 |
144 |
| CDS |
2169 |
3157 |
989 |
| intron |
500 |
560 |
61 |
| intron |
732 |
790 |
59 |
| intron |
977 |
1041 |
65 |
| intron |
1171 |
1244 |
74 |
| intron |
1288 |
1680 |
393 |
| intron |
1743 |
1806 |
64 |
| intron |
1951 |
2168 |
218 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
AAA99804 |
220 kDa silk protein [Chironomus thummi] |
7e-36 |
| InterPro |
IPR004153 |
CXCXC repeat |
|
| Pfam |
PF03128.9 |
CXCXC repeat |
1.5e-32 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.07253 |
| Pn.07254 |
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.00358 |