MidgeBase gene description page [Pn.13391]
Outline
| Gene ID | Pn.13391 |
| Type | Protein coding gene |
| Scaffold | PnScaf19432 |
| Start | 2366 |
| End | 3392 |
| Direction | - |
Sequence
Transcript: 534 (bp)
ATGGCTTTTTTGTTTGCGATTTTCTTTTCTGCACATCTTCAACGTACGGCCAAAAACATCAGCAGCAGTAGCTACAACAACAGCAGTAACAACAATAACAACATAAAAAATAGTAAAAGCAGATACAACAACAGAGCAGAAAATCATATAAAGATGGGCGAGCAGCAATTTTTCTTGAAATGGAATGACTTTCAAAACAACATGGTTTCATCGTTCAAGCATTTGCGTGATGAAAAGAGCTTCACCGATGTCACTTTGGCGTGCGACGGTCAAACATGCAAAGCTCACAAAATGGTTTTATCCGCCTGCAGTCCTTACTTTAAGACCTTGCTCGAGGAGAATCCATCAAAGCATCCCATCATAATTCTGAAGGACGTTTCTTTCAACCATTTGCAAGCTATTTTAGAATTCATGTATGCTGGTGAAGTAAATGTTTCGCAGGAGCAATTGCCGTCATTCTTGAAGACAGCTGATAGATTAAAAGTAAAAGGCCTTGCAGAGACTCAATCTCCATTCTCAAACAAGCGAGAGGGT
Protein: 178 (aa)
MAFLFAIFFSAHLQRTAKNISSSSYNNSSNNNNNIKNSKSRYNNRAENHIKMGEQQFFLKWNDFQNNMVSSFKHLRDEKSFTDVTLACDGQTCKAHKMVLSACSPYFKTLLEENPSKHPIIILKDVSFNHLQAILEFMYAGEVNVSQEQLPSFLKTADRLKVKGLAETQSPFSNKREG
| Type | Start | End | Length |
| CDS |
2369 |
2489 |
121 |
| CDS |
2547 |
2635 |
89 |
| CDS |
2703 |
2777 |
75 |
| CDS |
2867 |
3096 |
230 |
| CDS |
3374 |
3392 |
19 |
| intron |
2490 |
2546 |
57 |
| intron |
2636 |
2702 |
67 |
| intron |
2778 |
2866 |
89 |
| intron |
3097 |
3373 |
277 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001603477 |
PREDICTED: longitudinals lacking protein-like isoform 1 [Nasonia vitripennis] ref|XP_003425953.1| PREDICTED: longitudinals lacking protein-like isoform 2 [Nasonia vitripennis] gb|EFN60744.1| Longitudinals lacking protein-like [Camponotus floridanus] gb|EFN85202.1| Longitudinals lacking protein-like [Harpegnathos saltator] gb|EGI61601.1| Longitudinals lacking protein-like protein [Acromyrmex echinatior] |
3e-61 |
| InterPro |
IPR013069 |
BTB/POZ |
|
| InterPro |
IPR011333 |
BTB/POZ fold |
|
| InterPro |
IPR000210 |
BTB/POZ-like |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF00651.26 |
BTB/POZ domain |
5.3e-29 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.09561 |
| P. humanus |
PHUM228760-PA |
| A. mellifera |
GB10633-PA |
| T. castaneum |
TC009535 |
| A. aegypti |
AAEL010244 |
| S. invicta |
SI2.2.0_10955 |
| N. vitripennis |
NV14867-PA |
| A. gambiae |
AGAP011247 |
| C. quinquefasciatus |
CPIJ005014 |
| D. plexippus |
DPOGS202712PA |
| D. melanogaster |
FBgn0022238 |