MidgeBase gene description page [Pn.13388]
Outline
| Gene ID | Pn.13388 |
| Type | Protein coding gene |
| Scaffold | PnScaf19421 |
| Start | 3093 |
| End | 4200 |
| Direction | + |
Sequence
Transcript: 1041 (bp)
ATGGCAACAAGATACTTGACAGAGCTATTCTCTTTGATGAGAAACTCTCACAGTTATCGGAATAATCACTTTTCATCGAGAGGCACTGATAGCGAGAAATTGCTTAAAAGAAAAAGCTCTGGATCTGACGAAGAGACTGAAGTAAACGAGGAATATGTCTCGCCGCCAATTTGGGCTGACACAGTCGAAAATACAAAGTATACAATCTCAAGAATACAAAGTAAACAGGCAGAATTGGAGGTTCTGCATAAAAAGCTTCTTCGGCCTGAGTTCATCGAAAAAAGTGACGACGAAATTCAAATGGAACAATTGGGACAAGAGATTTCAAAACTCATCAGCATTGCTCACAAAAATATTCTTATCATAAAATCGCACCAGTACTCAACGAGTAGTGTGCAAGAAAAAAAATTAATTGACAATGTCGTGCGAGGACTCATCTTCACTCTTCAGAATCAAACGGCAACATTTAGAAATGAACAAAACTCGTATTTAAAGCAGATCAATCAAATGGAAGAGTACACAAATGAGTTTTTCGACTCATTAAACTTCAACGGTGGTACAGAAGATAAAACATCCGTTGACTCGTTTGACAATTTCCTTAAGCCCACAACCTTATCGACAATAGCATCGACCAGCTACAATCAGAGTCAACTAGATGACCTGAATAACGACGATGAAAAATTAGACGAATATTTTCAACTTAAACCAAATCAAAAGTTTGATCAGCAGCAATTACTTCGCTTTGAAGTCGACAACACGAAAGTGATTGAGGCACGCGAGAGGGAGGTGATGCATATAGTTAAATCAATAGTCGACCTCAACCAAATCTACAAGGACTTGTCACACTTGGTCGAGGAGCAGGGCACGATCTTAGATAGAATTGACTTCAATGTCGAGTCAACGCAGACAAGGGTCTACGAGGGCTACAAACAGCTGCAAAAGGCTGAGCGCTATCAGCGTGCAAATAGGAAAATGTACTGCATATTTGTTCTCTCGATCGTGACGCTCTTCATGATTATTCTTCTCATTATTGTTAAATTT
Protein: 347 (aa)
MATRYLTELFSLMRNSHSYRNNHFSSRGTDSEKLLKRKSSGSDEETEVNEEYVSPPIWADTVENTKYTISRIQSKQAELEVLHKKLLRPEFIEKSDDEIQMEQLGQEISKLISIAHKNILIIKSHQYSTSSVQEKKLIDNVVRGLIFTLQNQTATFRNEQNSYLKQINQMEEYTNEFFDSLNFNGGTEDKTSVDSFDNFLKPTTLSTIASTSYNQSQLDDLNNDDEKLDEYFQLKPNQKFDQQQLLRFEVDNTKVIEAREREVMHIVKSIVDLNQIYKDLSHLVEEQGTILDRIDFNVESTQTRVYEGYKQLQKAERYQRANRKMYCIFVLSIVTLFMIILLIIVKF
| Type | Start | End | Length |
| CDS |
3093 |
3170 |
78 |
| CDS |
3235 |
4197 |
963 |
| intron |
3171 |
3234 |
64 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002064405 |
GK19716 [Drosophila willistoni] gb|EDW75391.1| GK19716 [Drosophila willistoni] |
2e-78 |
| InterPro |
IPR000727 |
Target SNARE coiled-coil domain |
|
| InterPro |
IPR010989 |
t-SNARE |
|
| Gene Ontology(BP) |
GO:0016192 |
vesicle-mediated transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Pfam |
PF05739.14 |
SNARE domain |
1.4e-19 |
| Pfam |
PF00804.20 |
Syntaxin |
0.0006 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| H. melpomene |
HMEL016390-PA |
| A. aegypti |
AAEL011834 |
| T. castaneum |
TC009870 |
| H. sapiens |
ENSP00000360180 |
| C. quinquefasciatus |
CPIJ011353 |
| B. mori |
BGIBMGA009165-TA |
| A. gambiae |
AGAP000850 |
| H. sapiens |
ENSP00000457522 |
| H. sapiens |
ENSP00000354445 |
| N. vitripennis |
NV14643-PA |
| H. sapiens |
ENSP00000352634 |
| P. humanus |
PHUM492020-PA |
| H. sapiens |
ENSP00000350723 |
| H. sapiens |
ENSP00000360183 |
| H. sapiens |
ENSP00000360173 |
| P. vanderplanki |
Pv.12653 |
| S. invicta |
SI2.2.0_07561 |
| H. sapiens |
ENSP00000400794 |
| D. melanogaster |
FBgn0031106 |
| A. mellifera |
GB14922-PA |
| M. musculus |
ENSMUSG00000027522 |
| H. sapiens |
ENSP00000348229 |
| H. sapiens |
ENSP00000355408 |
| D. plexippus |
DPOGS213360PA |