MidgeBase gene description page [Pn.13386]
Outline
| Gene ID | Pn.13386 |
| Type | Protein coding gene |
| Scaffold | PnScaf19406 |
| Start | 35315 |
| End | 37759 |
| Direction | + |
Sequence
Transcript: 2019 (bp)
ATGAAGCTGCTTTGGCTGCTCTTTGTGAGCAGTTGCGTGTGCAGTCAGGCTGACGAACCGGCGAGCAAGCGAATCAGCATATTCAGCGACCACAAGAGAATAAAGCCAACAGCGTTTCAGCGAATCAAGGAGAAATACACGAAGGCCCCCGAACCACCGTCCGACGTTGGTTTCGTTCCGGGTGAGTGTGCTGCACGAAGCGAAGGTTCAATCAACAGCTTGATGAACTCAATGGGCGACACTTTCTTGAGTCTGCAGTGCTCGCTCTCCGCCGCTTCCGACTGGCCGGAAGACTTCGGGCCGACAGCTCTGCGGCAAGGCAAGTCCAACACCTTCCAAATCTACCGAAAAGCGCGAGCACTTGATGACTTTGACTTCGTCATCGTCGGCGGCGGTTCAGCGGGTTCTGTCGTCGCCAACCGCCTCAGCGAGAGAACAGATTGGAAAATTTTGCTAATTGAGGCGGGCCGTGATCCGCCAAGCGAGAGCGAGATTCCCGGCATGTTTGCCTCCCTGTGGAATTCGTCGTACTCGTACAAGTACCGCACCGAGGCGTCGACGAAGGCGGGCTTGGCGCAAAAAGGCGGCATTTTTTATCCGCAGGGGAAGATGCTCGGCGGGACGAGTTCGCTCAACGCGATGCTCTACGTTCGCGGTTCTCCCGACGACTTTAACGGCTGGAATGTCAAAGGTTGGACGTTCGATGACGTCCTTCCATATTTCAAAAAGTCCGAAGGCAACAAGCACCTGGTCGATCAGAAATTCCATGGCACGAGTGGACCGCTCGGCGTCAGCAATTTTCCCAACGATGAGGTCGTGAAGGCGGGAATTTTGGGGGGAATTGCTGAGGGCGGCTATGCCCAACTCAACGACGTCAACGCCGAGCAAAAAATTGGCTTCGCTCTCGTGCAGGGCACGCTGAAGGATAACAAGCGATGCAGCAGCGCAAAGGCATTTTTGTCGCCTCTCAGGAGCCGACCAAATGTCAAGGTCATAAAGAGCGGTGTCGTCAGCAGCCTCATTGTAAATGGCGCGCAAGTCGAAGGCGTGAATTTCGAGCTGAGTGGGCGACGATTAACGGTGCGCGCAAGAAAGGAGGTGATTGTCTCGGCCGGTTCATTCGAGTCCCCAAAGCTGCTGATGTTATCGGGAATCGGTCGAATCGATGATTTGCGGCCGTACAACATCCCGCAAATCGCCGATCTTCCAGTCGGCTACAATTTGCAGGATCACGTGAGCGTAACGAGAGCCTTTAGCTTCCTCAAGTCCGTCGCACCCGACGACAGTGTCCATGAAGGCTTCAGCTCGCTTATCACGTACTTAATGAAGAACTCTGGCCATCTCGCGGGCGTCGGCTGCGCAAATCTCCTAGGATTTATCGGCACAAAAGGGCAGACGACGTCGCCCGACATCGAGTACATTCACATGTGTACGCCCAAGAAAATGATCGGCTACGACAAGGTGGTGCAAGCATTTGGCTTCGACGACTTTCTTGCGACTCAGTTTTCGGCTCTCAGCCAGCTGGCACCGGTTCTGGCGGCCACGCCGATTCTCCTCAAGGCAAAGTCCCGTGGAACTGTCAAACTTCGCAGCGGAAACTTCAAGGACGCTCCCGCCATCGTGCCCAACTTTTTCGACCACGAGGACGACGTTGCGACGATGATCGCGGGCATTCGCGAGTACCGAAAGTTCCTCGGCACGAATTCCTTCAAAGGCTTCGAAATCAGCGAGCTTCGCTTCAATCTTCCCGAGTGCGACGTCTTCGAGTACGACAGCGACAACTACTGGCGCTGCTACATCAAGTACTTGTCGGCGACGATGTGGCATCCGGTAGGAACCTGCAAGATGGGCAACGACGACGACCAGAGTGCGGTCGTTGCAGCCGACTTGAAAGTCAAAGGCTTGCGCGGCGTGAGAGTCGTTGACGCGAGCGTAATGCCAAATGTCATTGCCGGTCACACGAATGCAGCCGCGATCATGATCGCCGAGAAGGCATCGGACATGATCAAGCGAGAGTGG
Protein: 673 (aa)
MKLLWLLFVSSCVCSQADEPASKRISIFSDHKRIKPTAFQRIKEKYTKAPEPPSDVGFVPGECAARSEGSINSLMNSMGDTFLSLQCSLSAASDWPEDFGPTALRQGKSNTFQIYRKARALDDFDFVIVGGGSAGSVVANRLSERTDWKILLIEAGRDPPSESEIPGMFASLWNSSYSYKYRTEASTKAGLAQKGGIFYPQGKMLGGTSSLNAMLYVRGSPDDFNGWNVKGWTFDDVLPYFKKSEGNKHLVDQKFHGTSGPLGVSNFPNDEVVKAGILGGIAEGGYAQLNDVNAEQKIGFALVQGTLKDNKRCSSAKAFLSPLRSRPNVKVIKSGVVSSLIVNGAQVEGVNFELSGRRLTVRARKEVIVSAGSFESPKLLMLSGIGRIDDLRPYNIPQIADLPVGYNLQDHVSVTRAFSFLKSVAPDDSVHEGFSSLITYLMKNSGHLAGVGCANLLGFIGTKGQTTSPDIEYIHMCTPKKMIGYDKVVQAFGFDDFLATQFSALSQLAPVLAATPILLKAKSRGTVKLRSGNFKDAPAIVPNFFDHEDDVATMIAGIREYRKFLGTNSFKGFEISELRFNLPECDVFEYDSDNYWRCYIKYLSATMWHPVGTCKMGNDDDQSAVVAADLKVKGLRGVRVVDASVMPNVIAGHTNAAAIMIAEKASDMIKREW
| Type | Start | End | Length |
| CDS |
35315 |
35460 |
146 |
| CDS |
35522 |
35541 |
20 |
| CDS |
35601 |
35786 |
186 |
| CDS |
35873 |
36012 |
140 |
| CDS |
36083 |
36688 |
606 |
| CDS |
36836 |
37756 |
921 |
| intron |
35461 |
35521 |
61 |
| intron |
35542 |
35600 |
59 |
| intron |
35787 |
35872 |
86 |
| intron |
36013 |
36082 |
70 |
| intron |
36689 |
36835 |
147 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_310335 |
AGAP003785-PA [Anopheles gambiae str. PEST] gb|EAA06000.3| AGAP003785-PA [Anopheles gambiae str. PEST] |
1e-140 |
| InterPro |
IPR000172 |
Glucose-methanol-choline oxidoreductase, N-terminal |
|
| InterPro |
IPR012132 |
Glucose-methanol-choline oxidoreductase |
|
| InterPro |
IPR007867 |
Glucose-methanol-choline oxidoreductase, C-terminal |
|
| Gene Ontology(BP) |
GO:0006066 |
alcohol metabolic process |
|
| Gene Ontology(BP) |
GO:0055114 |
oxidation-reduction process |
|
| Gene Ontology(MF) |
GO:0016614 |
oxidoreductase activity, acting on CH-OH group of donors |
|
| Gene Ontology(MF) |
GO:0008812 |
choline dehydrogenase activity |
|
| Gene Ontology(MF) |
GO:0050660 |
flavin adenine dinucleotide binding |
|
| Pfam |
PF01266.19 |
FAD dependent oxidoreductase |
1e-06 |
| Pfam |
PF00732.14 |
GMC oxidoreductase |
4e-64 |
| Pfam |
PF07992.9 |
Pyridine nucleotide-disulphide oxidoreductase |
0.0031 |
| Pfam |
PF01134.17 |
Glucose inhibited division protein A |
0.026 |
| Pfam |
PF02254.13 |
TrkA-N domain |
0.05 |
| Pfam |
PF04820.9 |
Tryptophan halogenase |
0.014 |
| Pfam |
PF12831.2 |
FAD dependent oxidoreductase |
0.055 |
| Pfam |
PF13450.1 |
NAD(P)-binding Rossmann-like domain |
0.0002 |
| Pfam |
PF05834.7 |
Lycopene cyclase protein |
7.7e-05 |
| Pfam |
PF00890.19 |
FAD binding domain |
1.9e-06 |
| Pfam |
PF13738.1 |
Pyridine nucleotide-disulphide oxidoreductase |
0.0039 |
| Pfam |
PF05199.8 |
GMC oxidoreductase |
1.3e-37 |
| Pfam |
PF01946.12 |
Thi4 family |
0.0021 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| D. melanogaster |
FBgn0030593 |
| A. aegypti |
AAEL004027 |
| P. vanderplanki |
Pv.08406 |
| B. mori |
BGIBMGA012999-TA |
| A. mellifera |
GB16807-PA |
| C. quinquefasciatus |
CPIJ007622 |
| A. gambiae |
AGAP012609 |
| C. quinquefasciatus |
CPIJ007620 |
| A. mellifera |
GB12121-PA |
| A. mellifera |
GB16297-PA |
| B. mori |
BGIBMGA012998-TA |
| P. humanus |
PHUM448850-PA |
| P. humanus |
PHUM448840-PA |
| D. melanogaster |
FBgn0030594 |
| A. mellifera |
GB20020-PA |
| P. humanus |
PHUM448860-PA |
| N. vitripennis |
NV15457-PA |
| P. vanderplanki |
Pv.15771 |
| C. quinquefasciatus |
CPIJ007621 |
| A. gambiae |
AGAP003785 |
| A. aegypti |
AAEL004025 |
| B. mori |
BGIBMGA013000-TA |
| P. vanderplanki |
Pv.15760 |
| T. castaneum |
TC015714 |
| B. mori |
BGIBMGA012997-TA |
| A. mellifera |
GB19832-PA |