MidgeBase gene description page [Pn.13359]
Outline
| Gene ID | Pn.13359 |
| Type | Protein coding gene |
| Scaffold | PnScaf19356 |
| Start | 890 |
| End | 3941 |
| Direction | - |
Sequence
Transcript: 1869 (bp)
ATGGATTTTCCATATGATCCACAAGAACTTGTGGCATTCGCCATGATTGGCGTGATCAGCGGTCTTGGCGGAGCGGCCTATGTTTGGATTCATCGTCAGTATGTTTTGTTTATGAGATCAAGCAAAAGAATGAACAGCTTTCTGCAAAAGAATCGATTTCTTTATCCCGGCATTCTAGCGCTAATGGTTGCAACAATTTCATATCCCAACGGCTTGGGAAGGTTTATTGCGGGTGAACTTAGCACACACGAGCAGGTCTCAAATCTTTTCACAAACTTCACCTGGTCAGAGCCAAATTTGAACGTCGAACAGTCTGCAATTGTATCATATTGGACAAATCCCTATACAAATGAAGTTTTTAGTATCTTAATCTGTTATTTATTGTATACGTTTTTTGTTTCTATTATAACTTCCACAATTCCCGTGCCAAGTGGAATTTTCATTCCTGTGTTTAAAATTGGAGCTGCATTAGGTAGAATAATTGGTGAGTCTATGCATCTCTGGTTTCCAAACGGCATACGATACGGAGGTCACATCAACCACATTATTCCCGGAGGTTATGCAGTCGTAGGCGCAAGTGCCTTCGCAGGTGCAGTTACTCACACAGTTTCAGTAGGCGTAATTGTGTTCGAGATGACGGGCCAAATTTCCCATTTAGTACCAGTTATGATAGCGACGCTCATCTCATGTGCCATAGCAACAATTCTTCAGCCATCAATGTACGATTCGATTATTCTCATAAAAAAATTGCCTTATTTACCCGACCTTCTGCCGACGTCAAGCGGAATGTACAATTTTACCGTAGAAGACTTCATGGTGCGCGACGTCAAGTACATTTGGCAAAGCATCAGCTACCAGGAGTTGAAAGAGATTTTGAAGAAAAACAAGCAGCTAAGAAGTTTGCCTCTAGTCGACAATCCCGATACGATGATTTTGCTTGGATCGGTGCAACGATATGACCTGATCAAAATGATTGACAAACACATTGGGCGCGAAAAACGCTTGGAGATGGCAGCTAGGCGTAAAAAGGAAGCAGAAGAGAGAGAGGAGCAAGAGAGAATTAAAAAACTGCAAGAAGCACCGCGACGTGCATCTCGCTTTGAAGTAGTGCCGGCGCCTGACATCATCAAACTCCGTCAAATCGCAAACAACGAAATGCTAACGCCACAGGCGAAGAAAGAAAGTTCGCAATTTACACCCGTACTCGGTTCACAGCCGAAGAAATCAATTCTTAAGAAAACAAACTCTTTCACAATGAAAGGCTTTAGTCCACTTTCGCCCCACAGTCCCGTTAACACACCCTATTCTACGATTACAGGTGCTGAAAGTCGACTACGCTCTGCATTTGACATAATATTTAGAAAGTCGGCCACACTACAAGACGTTCAAAACAATGATCCCGAACTCGGATCGAAGTCATCTATTCAGACACCTAGCATTGATGGAACGCACATTTCATCATCACACATTTCGAAGAAAGTTCAACTGCCACGAGAACGCGTAATTGATATGTCGGCCGAGGAGCAAAAAATGTGGGAAATGGAAGAGATGTCAAAGCCTATCGATTTGGAAGCGGCTAACGTTAACATAGATCCCTCACCCTTCCAATTAGTTGAACGAACTTCTTTGTTGAAGGTTCATTCACTGTTTTCGATGATTGGCATCAATCATGCCTACGTCACTAACGTCGGTCGTCTCGTCGGCGTTGTTGCTTTGAAAGAGCTTCGAAAAGCTATCGAGGACGTAAACAGTGGAAATCTTGTACCGAAAGAAAAGGTGCAAGAAACGAAGATTCCTGAAACGCCTGTGTCGCCTTGTGCAGAGCCGCTTTTAAACAAAGAGCTTATGAAAAATGAGAAAGAAGGTCTT
Protein: 623 (aa)
MDFPYDPQELVAFAMIGVISGLGGAAYVWIHRQYVLFMRSSKRMNSFLQKNRFLYPGILALMVATISYPNGLGRFIAGELSTHEQVSNLFTNFTWSEPNLNVEQSAIVSYWTNPYTNEVFSILICYLLYTFFVSIITSTIPVPSGIFIPVFKIGAALGRIIGESMHLWFPNGIRYGGHINHIIPGGYAVVGASAFAGAVTHTVSVGVIVFEMTGQISHLVPVMIATLISCAIATILQPSMYDSIILIKKLPYLPDLLPTSSGMYNFTVEDFMVRDVKYIWQSISYQELKEILKKNKQLRSLPLVDNPDTMILLGSVQRYDLIKMIDKHIGREKRLEMAARRKKEAEEREEQERIKKLQEAPRRASRFEVVPAPDIIKLRQIANNEMLTPQAKKESSQFTPVLGSQPKKSILKKTNSFTMKGFSPLSPHSPVNTPYSTITGAESRLRSAFDIIFRKSATLQDVQNNDPELGSKSSIQTPSIDGTHISSSHISKKVQLPRERVIDMSAEEQKMWEMEEMSKPIDLEAANVNIDPSPFQLVERTSLLKVHSLFSMIGINHAYVTNVGRLVGVVALKELRKAIEDVNSGNLVPKEKVQETKIPETPVSPCAEPLLNKELMKNEKEGL
| Type | Start | End | Length |
| CDS |
893 |
898 |
6 |
| CDS |
1369 |
1509 |
141 |
| CDS |
1738 |
2902 |
1165 |
| CDS |
2970 |
3054 |
85 |
| CDS |
3119 |
3200 |
82 |
| CDS |
3265 |
3399 |
135 |
| CDS |
3629 |
3697 |
69 |
| CDS |
3756 |
3941 |
186 |
| intron |
899 |
1368 |
470 |
| intron |
1510 |
1737 |
228 |
| intron |
2903 |
2969 |
67 |
| intron |
3055 |
3118 |
64 |
| intron |
3201 |
3264 |
64 |
| intron |
3400 |
3628 |
229 |
| intron |
3698 |
3755 |
58 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001651720 |
chloride channel protein 2 [Aedes aegypti] gb|EAT42523.1| chloride channel protein 2 [Aedes aegypti] |
0.0 |
| InterPro |
IPR014743 |
Chloride channel, core |
|
| InterPro |
IPR013785 |
Aldolase-type TIM barrel |
|
| InterPro |
IPR001807 |
Chloride channel, voltage gated |
|
| InterPro |
IPR000644 |
Cystathionine beta-synthase, core |
|
| Gene Ontology(BP) |
GO:0055085 |
transmembrane transport |
|
| Gene Ontology(BP) |
GO:0006821 |
chloride transport |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005216 |
ion channel activity |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0005247 |
voltage-gated chloride channel activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00654.15 |
Voltage gated chloride channel |
4.1e-36 |
| Pfam |
PF00571.23 |
CBS domain |
3.8e-11 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| B. mori |
BGIBMGA004625-TA |
| T. castaneum |
TC015520 |
| P. vanderplanki |
Pv.13887 |
| H. sapiens |
ENSP00000400425 |
| M. musculus |
ENSMUSG00000022843 |
| P. humanus |
PHUM210850-PA |
| S. invicta |
SI2.2.0_00748 |
| D. melanogaster |
FBgn0051116 |
| C. quinquefasciatus |
CPIJ003880 |
| A. mellifera |
GB10325-PA |
| N. vitripennis |
NV16944-PA |
| H. melpomene |
HMEL006071-PA |
| H. sapiens |
ENSP00000265593 |
| D. plexippus |
DPOGS213917PA |
| A. aegypti |
AAEL005942 |
| H. sapiens |
ENSP00000345056 |
| H. sapiens |
ENSP00000339867 |
| T. castaneum |
TC015519 |
| A. aegypti |
AAEL005950 |
| A. gambiae |
AGAP002891 |
| H. sapiens |
ENSP00000391928 |