MidgeBase gene description page [Pn.13298]
Outline
| Gene ID | Pn.13298 |
| Type | Protein coding gene |
| Scaffold | PnScaf19007 |
| Start | 83852 |
| End | 84882 |
| Direction | - |
Sequence
Transcript: 735 (bp)
ATGACACCAACACGTGGTGGAAGTAGAATTGCAGGTGGTACCGAAGCAGCTCGCAACCAATTTCCTTTTGCTGCAATTTTCTTTATTTATGCCCCAAACGATGACCAGTCGATTTGTTCTGGTTCAATTATAACAACATACTATGTGCTGTCTGCTGCTCATTGCTTTGTCAACGTTGAGTCTGCCGACCTGTTAGCCGGTGTTCATAACGTTGAGACAGAATTTCCTCTTTATGAGCACGAGATTTTTCCCTCTGACATTAGGCTGCACGAGCAATATGACAGAACTCGCTACACAAACGACATTGCCGTCGTGAGCACACAGCGAAAGCCTTTTTCATTCAACCGAGCTGAAATTCAACCTATCGTCATCGTGCCACGATCGTTCACCAACAATAATCTGACTGGTTATTCTGCAAGAGTTGCAGGATGGGGTCTAACAAGCGACACCTCACCTGTCTCGCCCGTTCCACGATTCATCGATGTGCCGGTCATTTCAAATGACGATTGTATGAAAACATTTGGCACTTTGATAACGAACGGGAATTTATGTTTGAGTGGAGCTAACGGACGCTCTACGTGCCCCGGAGACTCTGGTGGTGGATCAACCATCGCCTACGGAAGCACAAGAGTTCTCATTGGAATCGTTAGCTTTGGCAGTGACAGAGGATGCACGCTCGGCTTCCCAACAGCGCACACGTTAGTAACGATTCGAAGTTTTTTTTCCTTTAATAAC
Protein: 245 (aa)
MTPTRGGSRIAGGTEAARNQFPFAAIFFIYAPNDDQSICSGSIITTYYVLSAAHCFVNVESADLLAGVHNVETEFPLYEHEIFPSDIRLHEQYDRTRYTNDIAVVSTQRKPFSFNRAEIQPIVIVPRSFTNNNLTGYSARVAGWGLTSDTSPVSPVPRFIDVPVISNDDCMKTFGTLITNGNLCLSGANGRSTCPGDSGGGSTIAYGSTRVLIGIVSFGSDRGCTLGFPTAHTLVTIRSFFSFNN
| Type | Start | End | Length |
| CDS |
83855 |
84087 |
233 |
| CDS |
84253 |
84323 |
71 |
| CDS |
84385 |
84781 |
397 |
| CDS |
84849 |
84882 |
34 |
| intron |
84088 |
84252 |
165 |
| intron |
84324 |
84384 |
61 |
| intron |
84782 |
84848 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFX79589 |
chymotrypsin-like protein [Daphnia pulex] |
3e-34 |
| InterPro |
IPR009003 |
Peptidase cysteine/serine, trypsin-like |
|
| InterPro |
IPR001314 |
Peptidase S1A, chymotrypsin-type |
|
| InterPro |
IPR001254 |
Peptidase S1/S6, chymotrypsin/Hap |
|
| InterPro |
IPR018114 |
Peptidase S1/S6, chymotrypsin/Hap, active site |
|
| Gene Ontology(BP) |
GO:0006508 |
proteolysis |
|
| Gene Ontology(MF) |
GO:0004252 |
serine-type endopeptidase activity |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF00089.21 |
Trypsin |
6.7e-34 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.04453 |