MidgeBase gene description page [Pn.13215]
Outline
| Gene ID | Pn.13215 |
| Type | Protein coding gene |
| Scaffold | PnScaf18847 |
| Start | 18406 |
| End | 21531 |
| Direction | + |
Sequence
Transcript: 2907 (bp)
ATGGATATCAATGAAAACAACTTTCGTATATTGACTGAGTACTTGGCAAACACTCTCAGCCCGGATCCGAGCGTACGAAGGCCAGCGGAACAATTTCTGGAAACTGTGGATCACAATCGCAATTTTCCACAGCTTCTTTTGATGCTCATTGATAAGGACACCGTCGACATGACTATTCGAGTCGCCGGTGCTATAGCCTTCAAAAACTACATCAAGCGAAATTGGGGCAGAAGCGTAGAGAATCCAGACGAGCCCGATAGAATCCACGAGAGTGATAGAGTAGCAATTAAGAGCATGATTGTCCCAATGATGCTGAAATCGCCGATCGCTTTGCAGAAGCAGTTTAGCGACGCTATAAAAATCATCGGAAAATATGACTTCCCTAAGAAATGGCCGCAGTTGATGGACGAAATGATTGAGAAATTTCAAACAGGAGATTTTCATGTGATAAATGGAGTTTTGAAGACAGCTCATTCCCTCTTCAAGCGCTATCGATACGAGTTCAAGTCCCAAGAGTTGTGGGAAGAAATAAAGCTGGTGCTGGATAAGTTTGCAAAGCCTCTAACGGACCTGTTGCTTGCCACATTCAGCTTAAAAACGACGCATGGAGACAACGAAGCCGCTCTAAAAGTTATTTATGGCTCACTCGAGTTGATGTGCAAAGTGTTTTATTCACTAAATTCACAAGATCTGCCTGAGTTCTTTGAGGATAACATGCAAACATGGATGAAGACTTTCCACGAGCTGCTCGTAACCGATGTTCCTTGCCTAAAGACGGCAGACGACGAAGAGGCTGGAACACTGGAAATGCTTCGCTCTCAGATTTGCGATAACATTACGCTTTATGCTCAGAAGTACGACGAAGAGTTTGCACCATTTATGCAACAGTTTGTAACTGCTGTTTGGGAATTACTTGTGAACACTGGACAGCAGCCAAAATATGATGCGTTGGTAACCAATGCGCTGCATTTCCTGAGCACCGTTGCCGGAAGACAACAATATCGCTCGCTCTTCCAGGATCCAAACGTTTTGGCCAGTATTTGCGAAAAAGTCATTGTCCCAAACATGGACTTTAGAAATTCAGACGAGGAACTTTTTGAGGACAATCCTGAGGAGTACATAAGAAAAGATATTGAGGGCTCTGACATCGACACCCGACGCAGAGCAGTTTCTGATCTGTTGAGAACACTCTCACAGCATTTCGAAGCCAAAATTATCGAGTTGTTCAGTCAATATTTAACTATGCTGCTTGAAAAATTCAAGGCAGACCCCAAGAATAATTGGCGTGCAAAAGATACTGCAATTTATTTGGTGACAACACTTGCCGCAAAGGGATCAACTCAAAAACACGGTGTAACGCAAGCTTCTCAATTGGTTCCTCTGCCACAGTTTTGTCAAAGCGACATTCTTCCCGAATTGGAGCGTCCCGATATCAATGAGTTACCTGTTCTCAAAGCTGATGCACTCAAGTTTTTGATGACATTTCGTACCGTGCTCGGACAGCAAATCATCAGTACAATTCCTCAAGTGGTTCGTCACTTGAATGCAGACAGCTTTGTGGTTCATAGTTATGCAGCTTGCAACTTGGAGAAAATGCTAATCATGAAAGATGCAAACGGAAACCCTTTGGTGACTCAAGATGCTCTCGCTCCATTCGCCGGAAATGTAATTGAAGGACTATTTCAAGCTCTGTCTAAACCGAATTCAAACGAGAATGAATACATCATGAAGGCAATTATGCGAACTTTTAACACTTTGAATGAGCACTCAATGCCGTTTATGGCAATAGCATTGCCCAAACTCACTGAAATATTGACACAGGTTTCTAAGAATCCGTCGAAACCTCACTTTAATCATTATCTCTTCGAGTCGATTGCACTGGCCATTAAAATTGTTTGCAAAATTGAACCCAACGCGGTGGTTTCATTCGAAGAAGCATTGTTTCCGCAATTTCAATACATTTTGCAAAACGACATCATGGAGTTTCTTCCGTACGTGTTTCAGTTACTGTCGCTTCTCATGGAAATTCGACAGAATATTGGTCAGGTTCCTGAACCGTATTTCGCCCTCTTTCCTTGTCTCTTGAGCCCGATCTTGTGGGAGAGACCCGGTAACATTACGCCACTAATGAGGCTGTTGTGTACATTTGTAAAGCAAGCCTCACCGCAAATTAAGGCACAAGGAAAGCTGATGAGTGTTCTTGGAGTTTTCCAGAAGATGATTGCATCAAAGGCAAACGACCAGGAAGGATTCTACTTGCTTCAAAATTTAATTGCCTACTACCCTCGAGAAGACTTAATTCAAATTATGCCTCAAGTGTTTACTCTACTCTTTCAACGATTGAGCTCATCGAAAACTACAAAATTTGTCAAGTGTCTCATCGTTCTCTTCACATTCTATGCAGCGAAAGTTGGAACAGGCGAGCTCATTTCATTGATTGACGGTATCCAAAGCCAAATGTTTGGAATGGTTTGCCAACGGGTGTTTGTCACAGACTTGAACAAAGTCTCGGGAGAAATCGATCGAAAAATTGCGGCCATTGGTATGGCAAAGATCCTTTGCGATACACCTGCACTGCTCCAACCGCCCTACGTCACTCACTGGCATTCACTCGTACAAGCTCTAATCGAGTTATTTGAGCTTCCACCAGATGAAACAAACATTGAAGGCGACAGCTTCATAGAGGTTGAAGATGCTGCTGGATATCAGGTCGCTTATTCACAATTGAACTTTGCAACAACCAAGAAGGAGGATCCGTTCGCTGATGTTCGTGATGCAAAAAGATTCTTCCTCGAAAAGCTAGCTTGCATCCAACAGCCCGCTGTGAAATCAATGCTGCAGCAAATGACATCACAGCATCAGATCACTCTTCAAAAATATGCCAATCAATATGGTGTCACAATCGTT
Protein: 969 (aa)
MDINENNFRILTEYLANTLSPDPSVRRPAEQFLETVDHNRNFPQLLLMLIDKDTVDMTIRVAGAIAFKNYIKRNWGRSVENPDEPDRIHESDRVAIKSMIVPMMLKSPIALQKQFSDAIKIIGKYDFPKKWPQLMDEMIEKFQTGDFHVINGVLKTAHSLFKRYRYEFKSQELWEEIKLVLDKFAKPLTDLLLATFSLKTTHGDNEAALKVIYGSLELMCKVFYSLNSQDLPEFFEDNMQTWMKTFHELLVTDVPCLKTADDEEAGTLEMLRSQICDNITLYAQKYDEEFAPFMQQFVTAVWELLVNTGQQPKYDALVTNALHFLSTVAGRQQYRSLFQDPNVLASICEKVIVPNMDFRNSDEELFEDNPEEYIRKDIEGSDIDTRRRAVSDLLRTLSQHFEAKIIELFSQYLTMLLEKFKADPKNNWRAKDTAIYLVTTLAAKGSTQKHGVTQASQLVPLPQFCQSDILPELERPDINELPVLKADALKFLMTFRTVLGQQIISTIPQVVRHLNADSFVVHSYAACNLEKMLIMKDANGNPLVTQDALAPFAGNVIEGLFQALSKPNSNENEYIMKAIMRTFNTLNEHSMPFMAIALPKLTEILTQVSKNPSKPHFNHYLFESIALAIKIVCKIEPNAVVSFEEALFPQFQYILQNDIMEFLPYVFQLLSLLMEIRQNIGQVPEPYFALFPCLLSPILWERPGNITPLMRLLCTFVKQASPQIKAQGKLMSVLGVFQKMIASKANDQEGFYLLQNLIAYYPREDLIQIMPQVFTLLFQRLSSSKTTKFVKCLIVLFTFYAAKVGTGELISLIDGIQSQMFGMVCQRVFVTDLNKVSGEIDRKIAAIGMAKILCDTPALLQPPYVTHWHSLVQALIELFELPPDETNIEGDSFIEVEDAAGYQVAYSQLNFATTKKEDPFADVRDAKRFFLEKLACIQQPAVKSMLQQMTSQHQITLQKYANQYGVTIV
| Type | Start | End | Length |
| CDS |
18406 |
18490 |
85 |
| CDS |
18573 |
19066 |
494 |
| CDS |
19139 |
19637 |
499 |
| CDS |
19700 |
21528 |
1829 |
| intron |
18491 |
18572 |
82 |
| intron |
19067 |
19138 |
72 |
| intron |
19638 |
19699 |
62 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001653427 |
importin (ran-binding protein) [Aedes aegypti] gb|EAT39461.1| importin (ran-binding protein) [Aedes aegypti] |
0.0 |
| InterPro |
IPR001494 |
Importin-beta, N-terminal |
|
| InterPro |
IPR005043 |
CAS/CSE, C-terminal |
|
| InterPro |
IPR011989 |
Armadillo-like helical |
|
| InterPro |
IPR016024 |
Armadillo-type fold |
|
| InterPro |
IPR013713 |
Exportin/Importin, Cse1-like |
|
| Gene Ontology(BP) |
GO:0006886 |
intracellular protein transport |
|
| Gene Ontology(MF) |
GO:0005515 |
protein binding |
|
| Gene Ontology(MF) |
GO:0008565 |
protein transporter activity |
|
| Gene Ontology(MF) |
GO:0005488 |
binding |
|
| Pfam |
PF08389.7 |
Exportin 1-like protein |
0.064 |
| Pfam |
PF03810.14 |
Importin-beta N-terminal domain |
8e-14 |
| Pfam |
PF08506.5 |
Cse1 |
4.8e-161 |
| Pfam |
PF03378.10 |
CAS/CSE protein, C-terminus |
2.2e-158 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.10971 |
| H. sapiens |
ENSP00000262982 |
| N. vitripennis |
NV11244-PA |
| D. melanogaster |
FBgn0022213 |
| H. melpomene |
HMEL002750-PA |
| A. gambiae |
AGAP010711 |
| A. aegypti |
AAEL008741 |
| T. castaneum |
TC015935 |
| M. musculus |
ENSMUSG00000002718 |
| C. quinquefasciatus |
CPIJ011802 |
| D. plexippus |
DPOGS203512PA |
| B. mori |
BGIBMGA004241-TA |
| H. sapiens |
ENSP00000379495 |
| S. invicta |
SI2.2.0_80183 |
| A. mellifera |
GB17150-PA |
| P. humanus |
PHUM228000-PA |
| H. sapiens |
ENSP00000446477 |