MidgeBase gene description page [Pn.13165]
Outline
| Gene ID | Pn.13165 |
| Type | Protein coding gene |
| Scaffold | PnScaf18707 |
| Start | 4787 |
| End | 7024 |
| Direction | - |
Sequence
Transcript: 1890 (bp)
ATGGCTTGGCCCAAAGCAACCGTCTTAATCCTAATTCTGGCCTCCGCGGCGGCTTTCGATGAGGACGTCATTAAGGTGACACACGATGTCATCAACTCGGCTTTTGGCCGTCAAAAGCTGACATCCGTGACCTTCATCGACGCGCATTTGGATGCCAACCTGAGGGATGTTGACGACTTTATAAGCGACATGCTGGCGGTAATCGGCAGCAGTCACGTCTTCCAGATACTCAGTCTAGACACTGTGGTGCGGACAATCTTCAGGAGACGCTTGAGCTCGAACGTTGTCATCGTGAATGTCATGCGCGATTTTAAGAATTTTTCCAAAACCTTGACCCATCACACCTACGACTATGGAGGCTACTACGTAATTGTGTTTAAGAATGCGACTTTTGCGGAGACTCACGAGATTTTCCAGACGCTCTGGGACTTTTACATCTACAACCTGTGTCTAATAAGAGAAGTTGGCGACCAGGTCTTGGTCGAGACTTTCTTCCCGTTTCAGCCCAGCAAATGCAACACGACGGAGCCAGTGGCTGTAGCAGCGCATAGGAACGGAGAATTTGTGTTTAAACCAAGGGAATACTTTCCTTTGAAGTTCCAGAACTTCCACCAGTGTCCCCTGAAATACTCCACCTATGTAAGTCTCGGACCATCTGTCATTCGCCAAGACTTCCCGAACAAAAGCTTCGAGCTGGTCGGCCGCGATGTGGACATCCAGCAAGTTCTCGCCGAGTCATTTAACTTCAGGGCTGAGCGACAATTCATTGAAGGTTACGGCGGTTGGGGCTACTACAGCTCAAACGGCACCGCGACTCTCGGAATGGGTCGAGCCATAAGCCGAGAATCCGACTTCATCTTGGGAGGAAATCATCTGCAGTACGACAGATCGCTGGTGATGAGTCACTCCTACGAATACTTCATCGATACCCTTGTCGTTGTGCTGCCGCCAAGTCGTGAAATCAGCTCAATTTACAAGCTCATCAGACCACTCGACAAATACGTTTGGATTTGCTTTCTATTTACCGTGACAATGGCCATCCTCGTAATCATTGTGATTCAGTTTCAGTCGAAGCAAATCCGCGATTTTGTGTTTGGCACGGATGTTAGGAATCCCTGTATCAACCTCTTGACTGCCATTGTCGGCGGAAGTCAGGAAAAGTTACCGCGGCGGAATTTCGCCAGATCAATGCTGATGATGTTCCTACTGTTCTGCATTGTCGTTCGATCAGTTTATCAGGGCGCGGTTTACAATTTTCTGCAGAAAAGTGATCTGGAGCCTGACCCCAAAAATTTAGAGGAAATTGCTGAGCGAAATATGACCTTCTACATTCTCGTGTCGTGGGACGAAATGACTGTCGACAATCCGATCTTCAGAGGTCGCAGAGTGTTGGTCGATCCTGAAGCACATCACGATATGCTCAACGATACGCTGCACAAAAATTTTAATGGAGTTCTCATGACGGTCATATCGGAAGTTTTGTACGCCAACAAGTTGAGGTCCCTGCACGGGCTACCGCTGTTCAAAATCTGTCAGGATTATTTCTCGATAATACCGGTGGTCATGTATTTCCCGAAAAACAGCTATCTCGTTGAGCCTTTCAACACGCGACTCCTATTACTCGAATCATCAGGGCTGATTCAGCTGTGGCACTCAAACAACGCTGAAATGAAGTACCTCGAACATCCAAGCATTTATAGTGGACCGAAAAGCCTTAGATTGAGCCATCTGTCGTCGATATTTCAAATTTGGGCTTCTGCTTGCGTCACTGGATTCATCATTTTTATTTTAGAGTTGATTTTTAGCAGGGAGAGAATTAGAAGACTGAAGATGCGATTCGGTAGAGCTCCGGACTACACAGATTCAAACAAGTTTTGTGAAATTAACGTC
Protein: 630 (aa)
MAWPKATVLILILASAAAFDEDVIKVTHDVINSAFGRQKLTSVTFIDAHLDANLRDVDDFISDMLAVIGSSHVFQILSLDTVVRTIFRRRLSSNVVIVNVMRDFKNFSKTLTHHTYDYGGYYVIVFKNATFAETHEIFQTLWDFYIYNLCLIREVGDQVLVETFFPFQPSKCNTTEPVAVAAHRNGEFVFKPREYFPLKFQNFHQCPLKYSTYVSLGPSVIRQDFPNKSFELVGRDVDIQQVLAESFNFRAERQFIEGYGGWGYYSSNGTATLGMGRAISRESDFILGGNHLQYDRSLVMSHSYEYFIDTLVVVLPPSREISSIYKLIRPLDKYVWICFLFTVTMAILVIIVIQFQSKQIRDFVFGTDVRNPCINLLTAIVGGSQEKLPRRNFARSMLMMFLLFCIVVRSVYQGAVYNFLQKSDLEPDPKNLEEIAERNMTFYILVSWDEMTVDNPIFRGRRVLVDPEAHHDMLNDTLHKNFNGVLMTVISEVLYANKLRSLHGLPLFKICQDYFSIIPVVMYFPKNSYLVEPFNTRLLLLESSGLIQLWHSNNAEMKYLEHPSIYSGPKSLRLSHLSSIFQIWASACVTGFIIFILELIFSRERIRRLKMRFGRAPDYTDSNKFCEINV
| Type | Start | End | Length |
| CDS |
4790 |
4833 |
44 |
| CDS |
5056 |
5365 |
310 |
| CDS |
5422 |
6187 |
766 |
| CDS |
6255 |
7024 |
770 |
| intron |
4834 |
5055 |
222 |
| intron |
5366 |
5421 |
56 |
| intron |
6188 |
6254 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001650794 |
hypothetical protein AaeL_AAEL015150 [Aedes aegypti] gb|EAT32642.1| conserved hypothetical protein [Aedes aegypti] |
1e-51 |
| InterPro |
IPR001320 |
Ionotropic glutamate receptor |
|
| Gene Ontology(CC) |
GO:0016020 |
membrane |
|
| Gene Ontology(MF) |
GO:0005234 |
extracellular-glutamate-gated ion channel activity |
|
| Gene Ontology(MF) |
GO:0004970 |
ionotropic glutamate receptor activity |
|
| Pfam |
PF00060.21 |
Ligand-gated ion channel |
2.8e-09 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
| Gene ID |
| Pn.02438 |
| Pn.02439 |
| Pn.02440 |
Orthologous genes
| Species |
Gene ID |
| A. gambiae |
AGAP013520 |
| A. aegypti |
AAEL014688 |
| P. vanderplanki |
Pv.10769 |
| P. vanderplanki |
Pv.10770 |
| A. aegypti |
AAEL015149 |
| P. vanderplanki |
Pv.10771 |
| P. vanderplanki |
Pv.10772 |