MidgeBase gene description page [Pn.13118]
Outline
| Gene ID | Pn.13118 |
| Type | Protein coding gene |
| Scaffold | PnScaf18483 |
| Start | 40471 |
| End | 41646 |
| Direction | + |
Sequence
Transcript: 1119 (bp)
ATGGCAGAACCCTCACTCATCTTCAAAGGAAGTTCCTATTTGAAGCACAGACTTATATTAGCAACGCTCGCTGGAAAAGCGATCAGAATTACAGACATTCGAGTCAATAATGGTGGAATACAAGAATACGAGGTAAATTTGATCAGGCTCATCGATAAGCTGACGAATGGAACGAAGATAAGGCTGCATCCTTCAGGAAATGAACTTGATTTCACACCTGGAATATTGTATGGCGGATCTATCGAGCATCAATGCTGCGTTGACAAATCAATCGGCTATTATCTCGACGTTCTTATCGCGTTCGGGCCTTTCTGCAAAAATCCGATTGAGGCAAATCTAAAGGGAGTCACCAACAGCACGGAAAGTGCTTCCGTCGACCACGTCCGGGCTTCAGCCTTCAACATCATGAAGCGATTCATAATCGAGGAAGGTGCTTTTGAACTGAAAGTTCTGAAGCGAGGAATGAAGCCAAGCGGCGGAGGCGAAATACTATTTAAAATTAAGCCAGTGCTGAAGCTGAAGGCCCTGCAGCTCGAAAAGGCCGGAATGGTGAAGCGCATTCGAGGAACGGTCTACGCGTGCAAAGTGTCGCCGACATTCGCCAACAGAACCGTCGAGTCAGCCAAGGGAGTTATGCTCAACTTCCTGCCCGACATATACCTCCACACAGACCAGAACAAGGGCAAGCTCAGTGGCCTCTCGCCCGGATACGGCGTGAATTTGACGGCTGAAACAACAGAAAATGTCCTTTATTCGGCAGAAGTGGTGAGCACAACGCAAGGCTCATTGCCCGAGGACGTGGGCAAAGAGTGTGCAAACAGGCTTCTCGACGAGATCTATCGCGGTGGCTGCTGCGACTCGACGTTTCAATGGATTATGATGCTCTACATGGCACTCGGACCGAAAAGTGTGTCGAAAGTTGTAACCGGACCTCTCTCGCAACATAGCATACGATTTTTGCAGCTGCTGAAGGAAATCTTTGGCATCACCTTTAAATTGGACACTTTCGTAGATGACGATGACGAAGATGAGGTAGAAGAGGAAGAGAGCGGAAAGAGTCCGAAAGTAGTTTTAGCTTGCGTAGGCATTGGATATTCGAATTTGTCTAAGAGAGCATTG
Protein: 373 (aa)
MAEPSLIFKGSSYLKHRLILATLAGKAIRITDIRVNNGGIQEYEVNLIRLIDKLTNGTKIRLHPSGNELDFTPGILYGGSIEHQCCVDKSIGYYLDVLIAFGPFCKNPIEANLKGVTNSTESASVDHVRASAFNIMKRFIIEEGAFELKVLKRGMKPSGGGEILFKIKPVLKLKALQLEKAGMVKRIRGTVYACKVSPTFANRTVESAKGVMLNFLPDIYLHTDQNKGKLSGLSPGYGVNLTAETTENVLYSAEVVSTTQGSLPEDVGKECANRLLDEIYRGGCCDSTFQWIMMLYMALGPKSVSKVVTGPLSQHSIRFLQLLKEIFGITFKLDTFVDDDDEDEVEEEESGKSPKVVLACVGIGYSNLSKRAL
| Type | Start | End | Length |
| CDS |
40471 |
40744 |
274 |
| CDS |
40799 |
41643 |
845 |
| intron |
40745 |
40798 |
54 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_002010483 |
GI15953 [Drosophila mojavensis] gb|EDW07800.1| GI15953 [Drosophila mojavensis] |
1e-124 |
| InterPro |
IPR020719 |
RNA 3'-terminal phosphate cyclase-like, conserved site |
|
| InterPro |
IPR000228 |
RNA 3'-terminal phosphate cyclase |
|
| InterPro |
IPR023797 |
RNA 3'-terminal phosphate cyclase domain |
|
| InterPro |
IPR013796 |
RNA 3'-terminal phosphate cyclase, insert domain |
|
| InterPro |
IPR016443 |
RNA 3'-terminal phosphate cyclase type 2 |
|
| InterPro |
IPR013792 |
RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta |
|
| Gene Ontology(BP) |
GO:0006396 |
RNA processing |
|
| Gene Ontology(BP) |
GO:0042254 |
ribosome biogenesis |
|
| Gene Ontology(CC) |
GO:0005730 |
nucleolus |
|
| Gene Ontology(MF) |
GO:0003824 |
catalytic activity |
|
| Pfam |
PF01137.16 |
RNA 3'-terminal phosphate cyclase |
2.3e-90 |
| Pfam |
PF05189.8 |
RNA 3'-terminal phosphate cyclase (RTC), insert domain |
1.5e-30 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. vanderplanki |
Pv.06761 |
| N. vitripennis |
NV15100-PA |
| B. mori |
BGIBMGA009849-TA |
| D. melanogaster |
FBgn0020909 |
| H. sapiens |
ENSP00000371169 |
| A. mellifera |
GB12601-PA |
| C. quinquefasciatus |
CPIJ012313 |
| M. musculus |
ENSMUSG00000024785 |
| A. gambiae |
AGAP010498 |
| H. sapiens |
ENSP00000412000 |
| H. melpomene |
HMEL012643-PA |
| T. castaneum |
TC002529 |
| P. humanus |
PHUM613900-PA |
| A. aegypti |
AAEL001080 |
| D. plexippus |
DPOGS200861PA |
| S. invicta |
SI2.2.0_00019 |