MidgeBase gene description page [Pn.13114]
Outline
| Gene ID | Pn.13114 |
| Type | Protein coding gene |
| Scaffold | PnScaf18483 |
| Start | 22309 |
| End | 22896 |
| Direction | + |
Sequence
Transcript: 441 (bp)
ATGAAGCCGTGTGTTTTAATTGCGACGATAGTAAGTCTTTCGTTTGCACTTGTTCAAGGCAAAACTTTTCGTCGATGTGAATTTGCACGTGCTTTGTCGAGTAGCGGTGTGCAGAGGGAGTTCATTTCTAATTACGTTTGTCTTGCCGAGGCAGTGAGCGGTCTAGACACAAGCGCTTCGAAACAGAACGTCAGAAACCCGAAGGTGTCGCATTTAGGAATTTTTCAGATTCCCTCAAACGAGTGGTGCGGCATCAACGGAAAGTGTCAACTTCCATGCTCGAAACTCATTGATGAGAACGTGAAGGATGACATTCAGTGCGCTTTGAAAATTCAGGCGACATATGGTTTTAAGTTTTGGGACCGGTGGATGATAAGATGCAAGAGCAATGACTCACGAGACCCCAACAAATTTCTGCCCAATCTGCACAACTGCGGTCAT
Protein: 147 (aa)
MKPCVLIATIVSLSFALVQGKTFRRCEFARALSSSGVQREFISNYVCLAEAVSGLDTSASKQNVRNPKVSHLGIFQIPSNEWCGINGKCQLPCSKLIDENVKDDIQCALKIQATYGFKFWDRWMIRCKSNDSRDPNKFLPNLHNCGH
| Type | Start | End | Length |
| CDS |
22309 |
22441 |
133 |
| CDS |
22534 |
22683 |
150 |
| CDS |
22736 |
22893 |
158 |
| intron |
22442 |
22533 |
92 |
| intron |
22684 |
22735 |
52 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_003400088 |
PREDICTED: lysozyme c-1-like [Bombus terrestris] |
1e-21 |
| InterPro |
IPR001916 |
Glycoside hydrolase, family 22 |
|
| InterPro |
IPR023346 |
Lysozyme-like domain |
|
| Pfam |
PF00062.15 |
C-type lysozyme/alpha-lactalbumin family |
3.6e-22 |
| Pfam |
PF05497.7 |
Destabilase |
0.0064 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes