MidgeBase gene description page [Pn.13097]
Outline
| Gene ID | Pn.13097 |
| Type | Protein coding gene |
| Scaffold | PnScaf18409 |
| Start | 86 |
| End | 5107 |
| Direction | - |
Sequence
Transcript: 2604 (bp)
ATGGAGCAGTCGACAGCGACGACGACCACCACCACCACCAGCACGAGTGCATGTCGTCACGCACACAAGCGCCTCGCTCGAAAATTCGAAGTCACCGAAGTCACAAGTCAACTGTCGACGCACGGAACGAACCATCCGCACCGCGACGCCAATGAGCAGAGCCGTCCAATGAGCAAGCATCACCACTATCACCATCCCTCCGCGGGTGGCTTCCACCATCCGGCGGCCAAGGGGAGCGGCGCGAGTTTCGAGCTCAGCGACGTGCGCGTCCAGCCGTCGCCGTCCAACGGGCTCGCGCGAGTCAACGGACAAACGAACGGCGCCGCCAGCGACGTCGACTCCAATGACACAAACAACAACAACAACTACAACAAGCACCACCACAACCATCACAACCACCACCACCACCATCACCACAACCACCATCATGGCCATCACAAGAGGAGCGCTTCCTCCAGCGGCGGTGGCGGCGGCGGCGGCGGCGGCAGCGGCGAGTCGAGCAGCTCGAAGCGCACGAAACTCAGCGGCAGCGGCGGTGGAAGCAACAGCCAAAGTGTGCCAAATTTTCATCATACGAAATATGGAAATTCGAACTTCGGCGGCGGCGGCGGCGGCGGCGGAAGCTCTCTCGACCACACGACGGCGACGCCGCCGAGTGCGTCGATAGCTAGCAGTAGTAATAGTAACGGTAATCATAGTAGCGTTAACAGTAGCAGTAATTTCGGTGCTGGATTGCAACATGGCGGTCACTACAATATCATGGAGAAGCTAAAGGAATTGTATCGCGAGCTCAAGGCAGACAAGTCGCTGAAGGATCCTCACTTATCGGCGTCGTCGTTCCTCCTCGACAAGCTGGTGACGCGCGAGCGCCTCAACACACTCATCATCAACCTCTACCCGGGCAATAAGGGCTACACGCTGGCCTACCGCTCGCCCTCCACGACCGCCTCCTCGACGACGGCCACCGCCAAGACGGCGGCTCAGTCGCCGGGGAGCGCCAGTAGCGGCGGCGCCACCACAGCCGCCGCCGCTCAAGCAGACCGCGAGACGCTGCACGAGACGCCGTCGTGGCTGTACGACAACGCCTACCTGCTGGACGCGCTGGACGCGGAGGAGCTGCCGCCGCTGCTGATCGACTTCTGCAACGAGCACTGCCCGCACCTGTTCTACAACGGCGCCGTGATTGCGCAAATCCGCGACTACCGCCAGAGCTACCCGGTCGTCGACATCTGTGATATTCACTACGTGCTGCTGAGGCCGACGGCGGCGGCGCTGTGGGACGAGGTGAACGGCGCGTGCGACTCGAGCTGGACGACCAAGGACCGCGTGGTGCTCGAGTCGCAGCTGGTGCTGGCGACGGCGCCGCCCATCTGCCTCGACCCCTCGCCGGCGATCGGCATCGCGGCGATAAACGCGACGACTGAACGCTCACCGATTGCCTCCGCCGACGGCGTCCTCAAGATGGCCAAAAAGTTCCTCCAAGTCACCAAGAACCGCAACAACAAGCTCGAGAAGAAGACGCACTACCCGCAGCTCTCGCTCGCCAACTTTGTCGCCGTCGAACGGCGTCAGAGGCGGGACGCGGGCGGCGTGCGGCATGTCGCCGCTCCGAAACGGACGGCGCCGCCAGTGGCCGAAGCAACGCACGAGGTCCTGCACAAGACGCTGCCGGCGGTGCCGCCGTCGCAGCGCTACGACTGGCAGGCGCGCAACACCGAGCGACTCACGTTCGAGACCGACCGCGACAACTGCCAGTACCGGGTGCGCGTGGAGCTCTTCGAGCGGCCGACGACGTGCGAGATGAGCGGCCAGCTGACGCTCGAGCGGCAGAAGAGCGGCGGCGGCGGCGCCGTCAACGGGCGCATGTGCCCGTTCAAGCTCGCGTCGCCGCTCGCCGCGCGCCGCTACGTGAAGGAGTTCATGGGCATCTTCACGGAGGAGGGCCGGAAGTTCGTGAAGATCACGCACGAGCGCGAGACGCGCGGCGGCCGCGAGATCCTCGAGATGCAGACCGGCGAGAAGCTGCCGCACCAGAAGGTCGCCACGCCCGTGCTCATCGCCGCCGCCGCCGCCCAGCCCTCGCCGCAGACGCAGCTGCAGTCGCTGCAGCAGCTCATCTCATCGCCTTCCGCGTCGTCGATAACGTCGCCGCCGCCGGTGACGCCGCCCACGCCGCAACCTCCCGCGCCGCCCGCCTTGGTGGCAGCCACACCGACCGCCGCCCTCAAGCTGACGGCGACGCCGCAGCGAATCATCGCGGCGCGCCAGCCCGGACAGCAGGTCGTGGTGCTCGCGCAAGTGAAGCAGGAGTCGGCCGGCAACCAGGCCATCAAGAATCTCCTCAACCAGCCGCGCGCGCCCATGACGCAGAGCATGGTCAACGGCCTCAACCTGCAGACCGCGCAGGAGGTGCAGACGGTGTACGTGCAGGTCGACAACAACAGCCTCATACACATGGGCGGCGCCGTTCCCGCCAACCTCCAGTTCCAGCAGGTGATCGTTCCGACGCAGCCAGCAGCGCAGACGGGGCCGCAGACGTACACGATGAACGTGCAGACGGTGACGCCGCAGCAGGTGACGGTGGTGAAGCGGCACCGCGACATG
Protein: 868 (aa)
MEQSTATTTTTTTSTSACRHAHKRLARKFEVTEVTSQLSTHGTNHPHRDANEQSRPMSKHHHYHHPSAGGFHHPAAKGSGASFELSDVRVQPSPSNGLARVNGQTNGAASDVDSNDTNNNNNYNKHHHNHHNHHHHHHHNHHHGHHKRSASSSGGGGGGGGGSGESSSSKRTKLSGSGGGSNSQSVPNFHHTKYGNSNFGGGGGGGGSSLDHTTATPPSASIASSSNSNGNHSSVNSSSNFGAGLQHGGHYNIMEKLKELYRELKADKSLKDPHLSASSFLLDKLVTRERLNTLIINLYPGNKGYTLAYRSPSTTASSTTATAKTAAQSPGSASSGGATTAAAAQADRETLHETPSWLYDNAYLLDALDAEELPPLLIDFCNEHCPHLFYNGAVIAQIRDYRQSYPVVDICDIHYVLLRPTAAALWDEVNGACDSSWTTKDRVVLESQLVLATAPPICLDPSPAIGIAAINATTERSPIASADGVLKMAKKFLQVTKNRNNKLEKKTHYPQLSLANFVAVERRQRRDAGGVRHVAAPKRTAPPVAEATHEVLHKTLPAVPPSQRYDWQARNTERLTFETDRDNCQYRVRVELFERPTTCEMSGQLTLERQKSGGGGAVNGRMCPFKLASPLAARRYVKEFMGIFTEEGRKFVKITHERETRGGREILEMQTGEKLPHQKVATPVLIAAAAAQPSPQTQLQSLQQLISSPSASSITSPPPVTPPTPQPPAPPALVAATPTAALKLTATPQRIIAARQPGQQVVVLAQVKQESAGNQAIKNLLNQPRAPMTQSMVNGLNLQTAQEVQTVYVQVDNNSLIHMGGAVPANLQFQQVIVPTQPAAQTGPQTYTMNVQTVTPQQVTVVKRHRDM
| Type | Start | End | Length |
| CDS |
89 |
208 |
120 |
| CDS |
510 |
2177 |
1668 |
| CDS |
3575 |
4254 |
680 |
| CDS |
4886 |
5015 |
130 |
| CDS |
5102 |
5107 |
6 |
| intron |
209 |
509 |
301 |
| intron |
2178 |
3574 |
1397 |
| intron |
4255 |
4885 |
631 |
| intron |
5016 |
5101 |
86 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
EFR20330 |
hypothetical protein AND_20270 [Anopheles darlingi] |
2e-77 |
| InterPro |
IPR021950 |
Spt20 family |
|
| Pfam |
PF12090.3 |
Spt20 family |
5.2e-26 |
| Pfam |
PF01297.12 |
Periplasmic solute binding protein family |
0.0047 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| M. musculus |
ENSMUSG00000027751 |
| A. gambiae |
AGAP012403 |
| H. sapiens |
ENSP00000218894 |
| H. sapiens |
ENSP00000417510 |
| T. castaneum |
TC007192 |
| H. melpomene |
HMEL016663-PA |
| H. sapiens |
ENSP00000353388 |
| S. invicta |
SI2.2.0_00501 |
| H. sapiens |
ENSP00000439000 |
| P. humanus |
PHUM006420-PA |
| P. vanderplanki |
Pv.05778 |
| B. mori |
BGIBMGA001187-TA |
| N. vitripennis |
NV15037-PA |
| D. melanogaster |
FBgn0036374 |
| H. sapiens |
ENSP00000419754 |
| H. sapiens |
ENSP00000348512 |
| D. plexippus |
DPOGS213271PA |