MidgeBase gene description page [Pn.13080]
Outline
| Gene ID | Pn.13080 |
| Type | Protein coding gene |
| Scaffold | PnScaf18366 |
| Start | 155 |
| End | 1019 |
| Direction | + |
Sequence
Transcript: 795 (bp)
ATGTCTAGGAGAAGAAAGCAATCGACCAAACTGGTTTGTGACTCCTCTGAAGAGGATAATTTGCAATCTGCAAAAGTTGCAAAAGTTGCAACCCGCGATGACCAACTGCCTCCACAAGGCCAAAAGGACACTACAGTGGACCCTACAGGTTGGACCACTGTGGACAAGAAGAAAGGAGCGCAGGCCAAGACTGCTGCATCTGCCGCCAAAAAGAGCGATGATATGGACGTCGATCCTCGCGCCACAACCCTCAAGACGAAGCCCATATTCCTGGCGGCTGGATATGCGGTAGCTCTCAACCTACTCAAGGCCATGAACTTGTTGACGCGCCCAGCCATCAAGATCGTCAATAGCGAGATGGTTTTGATCCAGGCAGCAGATCAAACGAGCAAACTAGCCATCCTGGAAGCCATGAAGGTGAAACAGCTTCGTTTTCACACCTTCACCGAAAAATCGGCGCGCAAACCGACATTCATATTGAAGGGCATGTTCGCTGCCACCAATATCGAGATCCTTAAGGCGCTTAACGAGGCATCCGTCCCCGCTAAGTCAGTGACGATCATATCATCCAACAGCGATCGACCGCTGTACCGCGTGCAGTTCGAGAACGGCATCACCCTCGCACAACTCAACCAACAACATCGCACCGTCGACTCTTCGTGGTCAAATGGGCAACCAATAGTCGCCATGTACAGTGCGGAAACTGCAAGACCTGGGGTCATACTTAGGCCAACTGCGGACACAAATACCGCTGCATCAAATGCATCCACGACCATCCGCCTGCGATCACCCTGC
Protein: 265 (aa)
MSRRRKQSTKLVCDSSEEDNLQSAKVAKVATRDDQLPPQGQKDTTVDPTGWTTVDKKKGAQAKTAASAAKKSDDMDVDPRATTLKTKPIFLAAGYAVALNLLKAMNLLTRPAIKIVNSEMVLIQAADQTSKLAILEAMKVKQLRFHTFTEKSARKPTFILKGMFAATNIEILKALNEASVPAKSVTIISSNSDRPLYRVQFENGITLAQLNQQHRTVDSSWSNGQPIVAMYSAETARPGVILRPTADTNTAASNASTTIRLRSPC
| Type | Start | End | Length |
| CDS |
155 |
937 |
783 |
| CDS |
1005 |
1016 |
12 |
| intron |
938 |
1004 |
67 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
NA |
No hit found |
NA |
| Pfam |
PF12923.2 |
Ribosomal RNA-processing protein 7 (RRP7) |
0.13 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes