MidgeBase gene description page [Pn.13044]
Outline
| Gene ID | Pn.13044 |
| Type | Protein coding gene |
| Scaffold | PnScaf18316 |
| Start | 28771 |
| End | 30878 |
| Direction | - |
Sequence
Transcript: 1947 (bp)
ATGAGTTTGTACAATTTCAAGAAGATAATGGTGGTGCCGCCGGCAACATCATTTATCGACATTATGCTGTCGAGAACGCAGCGAAAGACACCAACAGTCGTTCACAAGCACTACAAAATATCCAGAATCCGTGCGTTCTACATGCGCAAAGTGAAATACACACAGCAAAACTTCCACGATCGGCTCTCACAAATCATCCAGGACTTTCCGAAGCTCGACGACATCCATCCCTTCTACGCCGACTTGATAAATGTTCTCTTCGAAAAGGATCACTATAAGCTGGCTCTCGGTCAACTCAACATGGCCCGACACCTCATCGATAACGTCGCAAAAGAGTATGTTCGTCTGCTAAAGTACGGCGATTCGCTTTATCGCTGCAAGCAATTAAAGAAGGCCGCTCTTGGACGAATGGCCACGATAATCAAGCGCCAAAAAGACAACTTGGCGTACCTCGAAACCGTGCGCCAGCATCTGTCACGTCTCCCGACCATCGATCCCTACACGCGAACAATCATCCTCACCGGATTTCCCAACGTCGGCAAGAGCTCGTTCATGAATAAAATCACACGCGCTGAAGTTGAGGTGCAGCCGTACGCGTTCACAACAAAGAGCCTGTTCGTCGGCCACACAGACTACAAGTATCTTCGCTGGCAAGTGATCGACACGCCCGGAATTCTCGATCATCCGCTCGAGGACCGCAATGTCATCGAAATGCAGGCCATCACTGCACTGGCGCATCTGCGAGCTTGCGTTCTCTACGTGATGGACATCTCGGAGCAGTGCGGTCACACTCTTGAGGAGCAGGTGCATCTGTACGAATCGATCAAGCCGCTCTTCGCCAACAAACCGCTCATGATTGTCGTCAACAAGGTGGACATCATAAAGCTGGACGAGCTCGACGAAAGCCGCCGTGAAGCAATCTCGAGGATTCTCAGCGACGAGAACGTCCCCGTCATACAGATGAGCACGGTGAGCGAGGAGGGCGTGATGGAGGTGAAGAATGAAGCGTGCGAGCGCCTGCTCGGCTTCCGCGTCGACCACAAAATGAAGACGAAGAAGGTGGAGAACATTCTGAATCGTCTTCACGTCGCCGTGCCCGAGAAGCGCGACAACAAGGAGCGCCCGGCATTCATTCCCGAGTGCGTGCAGCAGAAGCGCGAAATCGACGCTGCCGTGAGACAAAAGAGGAAGCTCGAGAAGGACATCGAGGAGGAGCTGGGCGACGACTACACGCTCGACTTGAAGAAACACTACGTCACGATCCCGGAGGAGGAGCGACACGACATCATTCCGGAGTTCTTGGAGGGTCACAACATCGCCGACTACATCGATCCGGACATTTTCGAGAAGCTCGAGGAGCTGGAGCGCGACGAGGGCATGCGACTCGAAAATGGCTTCTACGAGCCGCCCAAGCTCAACATCGACGAGACGTTGCAGGAGATTCGCGACATGGCACGACAAATCCGCACGAAGCGATTCATTTTGCGCGACAACAAGCGATTGGCGCCGCGAGCTGACAAGCCGAAAATTCCTCGACACAAGTTGCCGCACGTTCGCGAGCGAAAGGTTGAGGCTTTGAAGAACACTATGGAGGAGCTCGGCGTCGACATGAGCGGCAAGGACAACGCCAACTTCGTCAAGAGCCAGATGAGTTTGCGTCGCGGCATCATGCCGGCAATCGGTGGCAGTGCCGAGAGGAAGAAGGACAAGGAATCGTCGGCGATTGTGAAGTCGACTGGCCAGCCACTCAAGCGCAAGGCACCCAAACACGAACTCGGACTGACGAATGTCGTTGTGAAGAAGAAGGCGCAAGTGATGGCAAAGCACGACATCGCAAAAAAGCTAAAGAAGATGTGCCTGAAGGGAGAGGCCGATCGCTTCATTGGAGATCTGAAGCCAAAGCACTTGTTCAGTGGAAAGCGAGGCTCGGGCAAGACAGATCGCCGC
Protein: 649 (aa)
MSLYNFKKIMVVPPATSFIDIMLSRTQRKTPTVVHKHYKISRIRAFYMRKVKYTQQNFHDRLSQIIQDFPKLDDIHPFYADLINVLFEKDHYKLALGQLNMARHLIDNVAKEYVRLLKYGDSLYRCKQLKKAALGRMATIIKRQKDNLAYLETVRQHLSRLPTIDPYTRTIILTGFPNVGKSSFMNKITRAEVEVQPYAFTTKSLFVGHTDYKYLRWQVIDTPGILDHPLEDRNVIEMQAITALAHLRACVLYVMDISEQCGHTLEEQVHLYESIKPLFANKPLMIVVNKVDIIKLDELDESRREAISRILSDENVPVIQMSTVSEEGVMEVKNEACERLLGFRVDHKMKTKKVENILNRLHVAVPEKRDNKERPAFIPECVQQKREIDAAVRQKRKLEKDIEEELGDDYTLDLKKHYVTIPEEERHDIIPEFLEGHNIADYIDPDIFEKLEELERDEGMRLENGFYEPPKLNIDETLQEIRDMARQIRTKRFILRDNKRLAPRADKPKIPRHKLPHVRERKVEALKNTMEELGVDMSGKDNANFVKSQMSLRRGIMPAIGGSAERKKDKESSAIVKSTGQPLKRKAPKHELGLTNVVVKKKAQVMAKHDIAKKLKKMCLKGEADRFIGDLKPKHLFSGKRGSGKTDRR
| Type | Start | End | Length |
| CDS |
28774 |
28926 |
153 |
| CDS |
28994 |
30739 |
1746 |
| CDS |
30831 |
30878 |
48 |
| intron |
28927 |
28993 |
67 |
| intron |
30740 |
30830 |
91 |
Auto annotation result
| Program/Analysis | Accession | Description | Score/Expectation |
| BLASTP/NCBI-nr |
XP_001654061 |
nucleolar GTP-binding protein [Aedes aegypti] gb|EAT38228.1| nucleolar GTP-binding protein [Aedes aegypti] |
0.0 |
| InterPro |
IPR005225 |
Small GTP-binding protein domain |
|
| InterPro |
IPR006073 |
GTP binding domain |
|
| InterPro |
IPR010674 |
Nucleolar GTP-binding protein 1, Rossman-fold domain |
|
| InterPro |
IPR012973 |
NOG, C-terminal |
|
| Gene Ontology(MF) |
GO:0005525 |
GTP binding |
|
| Pfam |
PF06858.9 |
Nucleolar GTP-binding protein 1 (NOG1) |
3.6e-30 |
| Pfam |
PF13207.1 |
AAA domain |
1.9 |
| Pfam |
PF08477.8 |
Miro-like protein |
0.00029 |
| Pfam |
PF04670.7 |
Gtr1/RagA G protein conserved region |
0.00029 |
| Pfam |
PF00071.17 |
Ras family |
0.0041 |
| Pfam |
PF00350.18 |
Dynamin family |
0.00054 |
| Pfam |
PF13401.1 |
AAA domain |
0.14 |
| Pfam |
PF13191.1 |
AAA ATPase domain |
0.047 |
| Pfam |
PF13555.1 |
P-loop containing region of AAA domain |
0.15 |
| Pfam |
PF00025.16 |
ADP-ribosylation factor family |
0.064 |
| Pfam |
PF01926.18 |
50S ribosome-binding GTPase |
2.4e-18 |
| Pfam |
PF09439.5 |
Signal recognition particle receptor beta subunit |
0.003 |
| Pfam |
PF02421.13 |
Ferrous iron transport protein B |
4.5e-13 |
| Pfam |
PF08155.6 |
NOGCT (NUC087) domain |
2.1e-23 |
| Pfam |
PF13238.1 |
AAA domain |
1 |
| Pfam |
PF00009.22 |
Elongation factor Tu GTP binding domain |
0.0017 |
| Pfam |
PF04548.11 |
AIG1 family |
0.00014 |
| Pfam |
PF03308.11 |
ArgK protein |
0.056 |
| Pfam |
PF03193.11 |
Protein of unknown function, DUF258 |
0.041 |
Expression level (RPKM)
Paralog/Ortholog genes
Paralogous genes
Orthologous genes
| Species |
Gene ID |
| P. humanus |
PHUM501750-PA |
| H. sapiens |
ENSP00000445473 |
| B. mori |
BGIBMGA003221-TA |
| M. musculus |
ENSMUSG00000021149 |
| D. melanogaster |
FBgn0028473 |
| C. quinquefasciatus |
CPIJ004960 |
| H. melpomene |
HMEL003163-PA |
| H. sapiens |
ENSP00000354040 |
| P. vanderplanki |
Pv.06510 |
| A. mellifera |
GB17562-PA |
| T. castaneum |
TC008833 |
| A. aegypti |
AAEL009859 |
| H. sapiens |
ENSP00000444277 |
| D. plexippus |
DPOGS214560PA |
| N. vitripennis |
NV15684-PA |
| S. invicta |
SI2.2.0_14514 |
| A. gambiae |
AGAP007050 |